Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ACEWX4_RS13065 Genome accession   NZ_CP169369
Coordinates   2714501..2718370 (-) Length   1289 a.a.
NCBI ID   WP_374855064.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2710187..2732705 2714501..2718370 within 0


Gene organization within MGE regions


Location: 2710187..2732705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS13030 (ACEWX4_13030) - 2710187..2711163 (+) 977 Protein_2510 esterase/lipase family protein -
  ACEWX4_RS13035 (ACEWX4_13035) rplS 2711226..2711600 (-) 375 WP_168406100.1 50S ribosomal protein L19 -
  ACEWX4_RS13040 (ACEWX4_13040) trmD 2711774..2712523 (-) 750 WP_374855061.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACEWX4_RS13045 (ACEWX4_13045) rimM 2712550..2713098 (-) 549 WP_168384359.1 ribosome maturation factor RimM -
  ACEWX4_RS13050 (ACEWX4_13050) rpsP 2713127..2713384 (-) 258 WP_004809941.1 30S ribosomal protein S16 -
  ACEWX4_RS13055 (ACEWX4_13055) - 2713523..2713975 (-) 453 WP_104472458.1 type IV pilin protein -
  ACEWX4_RS13060 (ACEWX4_13060) - 2713969..2714496 (-) 528 WP_104472466.1 type IV pilin protein -
  ACEWX4_RS13065 (ACEWX4_13065) pilY1 2714501..2718370 (-) 3870 WP_374855064.1 pilus assembly protein PilY Machinery gene
  ACEWX4_RS13070 (ACEWX4_13070) - 2718386..2719195 (-) 810 WP_374855066.1 PilX N-terminal domain-containing pilus assembly protein -
  ACEWX4_RS13075 (ACEWX4_13075) - 2719185..2720147 (-) 963 WP_374855068.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEWX4_RS13080 (ACEWX4_13080) pilV 2720147..2720662 (-) 516 WP_104472464.1 type IV pilus modification protein PilV Machinery gene
  ACEWX4_RS13085 (ACEWX4_13085) - 2720659..2721210 (-) 552 WP_160240915.1 Tfp pilus assembly protein FimT/FimU -
  ACEWX4_RS13090 (ACEWX4_13090) ispH 2721374..2722324 (-) 951 WP_374855856.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEWX4_RS13095 (ACEWX4_13095) gmk 2722460..2723083 (+) 624 WP_045795273.1 guanylate kinase -
  ACEWX4_RS13100 (ACEWX4_13100) rpoZ 2723160..2723441 (+) 282 WP_005013174.1 DNA-directed RNA polymerase subunit omega -
  ACEWX4_RS13105 (ACEWX4_13105) - 2723665..2725764 (+) 2100 WP_160240914.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACEWX4_RS13110 (ACEWX4_13110) - 2725836..2726219 (+) 384 WP_005180461.1 RidA family protein -
  ACEWX4_RS13115 (ACEWX4_13115) - 2726374..2726568 (+) 195 WP_034597991.1 bacterioferritin-associated ferredoxin -
  ACEWX4_RS13120 (ACEWX4_13120) bfr 2726795..2727259 (+) 465 WP_005180468.1 bacterioferritin -
  ACEWX4_RS13125 (ACEWX4_13125) - 2727371..2729011 (-) 1641 WP_374855072.1 Wzy polymerase domain-containing protein -
  ACEWX4_RS13130 (ACEWX4_13130) tfpZ 2729104..2729838 (-) 735 WP_374855074.1 TfpX/TfpZ family type IV pilin accessory protein -
  ACEWX4_RS13135 (ACEWX4_13135) - 2729840..2731255 (-) 1416 WP_374855076.1 sulfatase-like hydrolase/transferase -
  ACEWX4_RS13140 (ACEWX4_13140) - 2731364..2731819 (-) 456 WP_374855858.1 pilin -
  ACEWX4_RS13145 (ACEWX4_13145) - 2731843..2731936 (-) 94 Protein_2533 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEWX4_RS13150 (ACEWX4_13150) - 2732145..2732705 (-) 561 WP_374855078.1 TPM domain-containing protein -

Sequence

Protein


Download         Length: 1289 a.a.        Molecular weight: 139832.17 Da        Isoelectric Point: 5.2664

>NTDB_id=1051073 ACEWX4_RS13065 WP_374855064.1 2714501..2718370(-) (pilY1) [Acinetobacter indicus strain AIBD14]
MKLRKIQISVLSAALTALMCTSVVQASDLQIYAMPTAGQKTIVMMVDVSGSMAWNMAGNTTNNTSQQRITQLKNGIRAVL
NSDDPKLENVVMGLGKFPRASGTKEGVILVPAAKLGAPARNGQPESAQRQALRWAVDNQLTAIGGTPTSHGYTEAASYLM
GTRTNSYIEEQQADVYRENLQRTGNSFNRKYYECTSYSSNISRIGSYYYQECLNFSSITATAFEGKSYDFYTNQSNPRSY
FIKTNIKTLIKVEKNQSNTSGFSNSVLDSKTTTNEIEHYKSPLPTNKVSCDGQGVYVLSDGEPNDSSDAAAQTQMINALS
SPVLNPPDTNFSCDVNASNLTNPLTGGNSGGAWKCMGEFAKRLYSGANPAGVKVQTAFVGYSNSFNNLSNDDVRNACKLG
SNLKGDACSYYQADGLTLNPNATRRNPESGYGNGGFYTATSANDVTQSVLNFIDNLGTDPLSPLPTGALSVPIDALNPNG
LQNVGYLRMLEPNPAQPSLLTWAGNLKKYTMKDGVLVDRNINIFDAIGNFATNTKNLWGSLLQNDGGLIQVGGTYEMLPM
PTETKQSTLRNLVTDVKDVNGNILVPLETRDETTGTVTPTPLLRVPNLDTGISKNTVLNQFRSQSVLSQFPVSVRLKLLN
YLGFKVDTALEELPENDEVSYEGSPYISMGGIIHSFPVQMTYSGVISSSGELLTQDIPLDDGNFVRARQQSVLYGSMEGG
LHIVDSLTGEEQMVFVPAEILNNEIASNALVQKGSGTPAPAHGVDAPWVVDATYRTSGTHPNAQVVATKMNVYGGLRMGG
NSFYALDVLNPKKPKLKFRIGPDLSDFSRMGQSWSKPTLINLRINGKPKRAMVVGGGYDMCYENPRFTLASAATENDTDN
CSTKTRAKGNAIYVVDADTGERLFWASNNDSDADNTHMKHSIVSRVSALDRDGDGFEDHLYFGDLGGQIFRIDLDNYHEK
AGESFGVRTTRLANLATNTDGTSITNGDNPRFYEPVTLTIHDEQGSTSSKTFIVVGAASGDRSTPLDVAPTEGRDGLSPN
IALSGRPVNKVYGIFDLDFINDSLITNRELTTDYTATTSEEDVPLSNRLLTRELTLKDLLSNPQVALTETNTAYSQYFNE
TAPKFGWYRSLSWSWDTTANGAELANGTFRKPGGLKAFEEPLAIGNNLFIPVYDPEGTGITPQDPCLPRVVGETDRQQYC
LPFGVCVTDTGAIDIMREKKTGFRVERDGAGWKNANVIGKGIQGIALANNGGTTGNNSCGNFTLASNTSGIGNWQCTRKL
NPTRWFEKR

Nucleotide


Download         Length: 3870 bp        

>NTDB_id=1051073 ACEWX4_RS13065 WP_374855064.1 2714501..2718370(-) (pilY1) [Acinetobacter indicus strain AIBD14]
ATGAAACTCAGAAAAATTCAAATATCAGTACTGAGTGCAGCCTTAACCGCGCTTATGTGTACTTCGGTTGTGCAGGCAAG
CGACTTGCAAATTTACGCAATGCCAACAGCAGGTCAAAAAACAATTGTCATGATGGTGGATGTCTCAGGTAGTATGGCTT
GGAACATGGCGGGCAATACAACAAACAATACTAGTCAACAACGGATTACGCAATTAAAAAATGGGATACGTGCCGTATTG
AATAGTGATGATCCAAAGCTTGAAAATGTAGTCATGGGGTTAGGTAAGTTTCCAAGGGCTAGTGGTACCAAGGAAGGGGT
TATTCTTGTGCCGGCTGCCAAATTAGGCGCGCCTGCTCGTAATGGTCAGCCTGAATCTGCACAGCGTCAAGCTCTTCGTT
GGGCTGTTGATAATCAATTGACAGCAATAGGTGGTACACCCACGTCTCATGGTTATACAGAAGCTGCATCATATTTAATG
GGGACTAGAACAAATTCTTATATAGAGGAGCAGCAAGCGGATGTGTATAGAGAAAATTTACAACGAACTGGTAATTCATT
TAATAGAAAATATTATGAATGTACTTCTTATAGCTCTAATATAAGTAGAATTGGTTCGTACTATTATCAAGAGTGTTTAA
ATTTTTCGTCAATAACTGCAACAGCATTCGAAGGTAAGAGCTATGATTTTTATACTAACCAAAGTAATCCACGTTCCTAC
TTCATTAAAACAAATATCAAGACACTTATAAAAGTAGAAAAAAATCAGAGTAATACAAGTGGTTTTTCTAACTCAGTTTT
AGATAGCAAAACTACAACTAATGAAATAGAACACTACAAGTCTCCTTTACCAACGAATAAAGTTTCTTGTGATGGTCAAG
GAGTATATGTTTTATCGGATGGGGAGCCTAACGACTCTTCTGATGCTGCGGCTCAAACTCAAATGATAAATGCTTTGTCA
TCTCCAGTTCTTAATCCGCCAGATACCAATTTTTCTTGTGATGTGAATGCTTCAAATTTAACAAATCCATTAACTGGTGG
AAATAGTGGTGGTGCTTGGAAATGTATGGGGGAGTTTGCTAAGCGCTTATATTCAGGAGCTAATCCAGCTGGGGTGAAAG
TTCAAACAGCATTTGTTGGTTATAGTAACAGCTTTAATAATCTCTCTAATGATGATGTAAGAAATGCATGTAAGTTGGGC
TCTAATTTAAAAGGTGATGCTTGTTCATACTATCAAGCCGATGGCTTAACACTCAATCCTAATGCAACTCGGCGTAATCC
TGAAAGTGGTTATGGAAATGGTGGATTTTATACCGCAACTTCGGCAAATGATGTCACCCAAAGCGTATTAAACTTTATTG
ATAACTTGGGAACGGATCCTCTATCTCCTCTACCAACAGGTGCTTTGTCTGTTCCGATTGATGCCTTAAATCCAAATGGA
TTACAAAATGTAGGTTATTTGCGTATGTTAGAGCCTAATCCGGCTCAACCTAGCTTGTTGACTTGGGCGGGAAATCTCAA
GAAATATACAATGAAAGATGGCGTCTTGGTCGATCGTAATATTAATATCTTTGATGCAATTGGTAATTTCGCAACCAATA
CTAAAAATTTGTGGGGTTCATTATTACAGAATGATGGTGGTTTGATTCAAGTTGGTGGGACATATGAAATGTTGCCTATG
CCAACTGAAACTAAGCAATCGACATTACGTAACTTGGTCACAGATGTAAAAGATGTAAATGGTAATATCTTGGTTCCATT
AGAAACTCGAGATGAGACTACAGGTACAGTGACACCTACTCCATTACTTCGAGTGCCGAATTTGGATACAGGAATTTCTA
AAAATACTGTTTTAAATCAATTTAGAAGTCAAAGTGTGCTCTCACAATTTCCAGTATCTGTGCGACTTAAGTTACTTAAC
TATTTAGGATTTAAAGTAGATACAGCGTTAGAAGAATTACCTGAAAATGATGAGGTGAGTTATGAAGGATCTCCATATAT
CAGTATGGGCGGCATTATTCACTCTTTCCCTGTTCAAATGACATATTCAGGCGTGATTTCTAGTTCTGGTGAACTATTAA
CTCAAGATATTCCATTGGATGATGGGAATTTTGTGCGAGCACGTCAGCAATCGGTTTTATATGGATCAATGGAGGGAGGA
TTGCATATCGTTGATTCTCTTACTGGTGAAGAGCAAATGGTATTTGTTCCTGCTGAAATTTTAAATAATGAAATAGCTTC
TAACGCGTTAGTTCAAAAAGGATCTGGTACTCCAGCACCAGCACATGGTGTAGATGCACCTTGGGTGGTTGATGCAACTT
ATCGTACTTCAGGAACTCATCCAAATGCGCAAGTTGTGGCGACAAAAATGAACGTATATGGTGGTTTAAGGATGGGAGGG
AACAGTTTCTATGCTCTGGATGTTCTTAATCCTAAAAAACCAAAGTTGAAATTTAGAATTGGTCCAGACTTAAGTGATTT
TAGTCGTATGGGGCAATCTTGGTCCAAACCTACATTAATTAATCTTCGTATAAATGGAAAGCCTAAAAGAGCCATGGTTG
TGGGTGGTGGTTATGATATGTGTTACGAAAATCCAAGATTTACACTAGCTTCAGCTGCAACTGAAAATGATACAGATAAC
TGTTCTACTAAGACTAGGGCTAAAGGTAACGCGATTTACGTGGTAGATGCCGATACAGGAGAACGCCTATTCTGGGCAAG
TAATAATGATTCAGATGCAGATAATACTCATATGAAGCATAGTATTGTCTCACGTGTCAGTGCTTTGGATCGCGATGGTG
ATGGTTTTGAAGATCATCTGTATTTTGGTGATTTGGGTGGCCAAATTTTCAGGATAGATCTAGATAATTATCATGAAAAA
GCAGGTGAATCTTTTGGTGTACGTACAACTAGACTTGCTAATTTGGCGACAAATACAGATGGAACGTCAATTACCAATGG
TGATAACCCACGTTTTTATGAACCAGTGACCTTAACAATTCATGATGAACAAGGTTCTACATCAAGTAAGACATTTATTG
TAGTAGGTGCAGCATCAGGTGATCGTAGTACCCCATTAGATGTTGCTCCAACAGAGGGGCGAGATGGATTGTCACCGAAT
ATTGCACTAAGCGGGCGTCCAGTAAATAAAGTTTACGGAATTTTTGACTTAGATTTTATTAATGACAGCCTGATTACTAA
TAGAGAGTTAACTACTGATTACACTGCAACTACAAGTGAAGAGGATGTACCTTTATCGAACCGTTTGCTTACCCGTGAAT
TAACCCTTAAAGACTTATTATCCAATCCACAGGTAGCATTAACAGAAACCAACACCGCATATAGTCAATATTTTAATGAG
ACTGCACCAAAATTTGGCTGGTACCGTTCGCTTTCTTGGAGTTGGGATACTACAGCTAATGGTGCTGAATTAGCCAATGG
AACATTTAGAAAGCCAGGTGGTCTTAAAGCATTTGAAGAGCCTTTAGCGATTGGAAATAATTTGTTTATTCCAGTTTATG
ATCCTGAAGGTACTGGTATTACACCACAAGACCCATGTTTGCCAAGGGTTGTCGGTGAGACAGATCGACAACAATATTGT
TTACCCTTTGGAGTATGTGTCACAGATACAGGCGCTATTGATATAATGCGTGAAAAGAAAACAGGGTTTCGTGTTGAGCG
TGACGGTGCAGGTTGGAAAAATGCAAATGTCATTGGCAAGGGGATTCAAGGTATTGCATTAGCAAACAATGGTGGTACAA
CAGGAAATAATAGTTGTGGAAACTTTACTCTTGCGAGCAATACGAGTGGCATTGGTAATTGGCAATGTACACGTAAATTG
AATCCGACTCGTTGGTTTGAAAAGAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(706-954)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

46.652

100

0.486

Multiple sequence alignment