Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ACEWX4_RS13080 Genome accession   NZ_CP169369
Coordinates   2720147..2720662 (-) Length   171 a.a.
NCBI ID   WP_104472464.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2710187..2732705 2720147..2720662 within 0


Gene organization within MGE regions


Location: 2710187..2732705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS13030 (ACEWX4_13030) - 2710187..2711163 (+) 977 Protein_2510 esterase/lipase family protein -
  ACEWX4_RS13035 (ACEWX4_13035) rplS 2711226..2711600 (-) 375 WP_168406100.1 50S ribosomal protein L19 -
  ACEWX4_RS13040 (ACEWX4_13040) trmD 2711774..2712523 (-) 750 WP_374855061.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACEWX4_RS13045 (ACEWX4_13045) rimM 2712550..2713098 (-) 549 WP_168384359.1 ribosome maturation factor RimM -
  ACEWX4_RS13050 (ACEWX4_13050) rpsP 2713127..2713384 (-) 258 WP_004809941.1 30S ribosomal protein S16 -
  ACEWX4_RS13055 (ACEWX4_13055) - 2713523..2713975 (-) 453 WP_104472458.1 type IV pilin protein -
  ACEWX4_RS13060 (ACEWX4_13060) - 2713969..2714496 (-) 528 WP_104472466.1 type IV pilin protein -
  ACEWX4_RS13065 (ACEWX4_13065) pilY1 2714501..2718370 (-) 3870 WP_374855064.1 pilus assembly protein PilY Machinery gene
  ACEWX4_RS13070 (ACEWX4_13070) - 2718386..2719195 (-) 810 WP_374855066.1 PilX N-terminal domain-containing pilus assembly protein -
  ACEWX4_RS13075 (ACEWX4_13075) - 2719185..2720147 (-) 963 WP_374855068.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEWX4_RS13080 (ACEWX4_13080) pilV 2720147..2720662 (-) 516 WP_104472464.1 type IV pilus modification protein PilV Machinery gene
  ACEWX4_RS13085 (ACEWX4_13085) - 2720659..2721210 (-) 552 WP_160240915.1 Tfp pilus assembly protein FimT/FimU -
  ACEWX4_RS13090 (ACEWX4_13090) ispH 2721374..2722324 (-) 951 WP_374855856.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEWX4_RS13095 (ACEWX4_13095) gmk 2722460..2723083 (+) 624 WP_045795273.1 guanylate kinase -
  ACEWX4_RS13100 (ACEWX4_13100) rpoZ 2723160..2723441 (+) 282 WP_005013174.1 DNA-directed RNA polymerase subunit omega -
  ACEWX4_RS13105 (ACEWX4_13105) - 2723665..2725764 (+) 2100 WP_160240914.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACEWX4_RS13110 (ACEWX4_13110) - 2725836..2726219 (+) 384 WP_005180461.1 RidA family protein -
  ACEWX4_RS13115 (ACEWX4_13115) - 2726374..2726568 (+) 195 WP_034597991.1 bacterioferritin-associated ferredoxin -
  ACEWX4_RS13120 (ACEWX4_13120) bfr 2726795..2727259 (+) 465 WP_005180468.1 bacterioferritin -
  ACEWX4_RS13125 (ACEWX4_13125) - 2727371..2729011 (-) 1641 WP_374855072.1 Wzy polymerase domain-containing protein -
  ACEWX4_RS13130 (ACEWX4_13130) tfpZ 2729104..2729838 (-) 735 WP_374855074.1 TfpX/TfpZ family type IV pilin accessory protein -
  ACEWX4_RS13135 (ACEWX4_13135) - 2729840..2731255 (-) 1416 WP_374855076.1 sulfatase-like hydrolase/transferase -
  ACEWX4_RS13140 (ACEWX4_13140) - 2731364..2731819 (-) 456 WP_374855858.1 pilin -
  ACEWX4_RS13145 (ACEWX4_13145) - 2731843..2731936 (-) 94 Protein_2533 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACEWX4_RS13150 (ACEWX4_13150) - 2732145..2732705 (-) 561 WP_374855078.1 TPM domain-containing protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18099.74 Da        Isoelectric Point: 6.4305

>NTDB_id=1051074 ACEWX4_RS13080 WP_104472464.1 2720147..2720662(-) (pilV) [Acinetobacter indicus strain AIBD14]
MNTAYQRGVGLMEVLVALLLLAIGVLGYTALQVRAVEASTEATQRSHALFVLKGLAESIRANNTGRTAYQNLVNTAQESV
HAKACINSNNLCTAENLARADVAQAQANAGNFGMQLRMEVCPGVANVTGEETRMCLYAAWGATNITANTTACMNATGVYV
VGSSCLMMELY

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1051074 ACEWX4_RS13080 WP_104472464.1 2720147..2720662(-) (pilV) [Acinetobacter indicus strain AIBD14]
ATGAATACAGCTTATCAACGTGGTGTTGGGCTAATGGAAGTCTTGGTAGCCCTTCTCCTCTTAGCAATAGGTGTGTTGGG
TTATACCGCATTGCAAGTACGTGCGGTTGAGGCGAGTACGGAAGCAACCCAAAGGTCTCATGCTTTATTTGTACTTAAAG
GGTTGGCTGAGAGCATTCGTGCAAATAATACAGGAAGGACAGCCTATCAAAATTTAGTAAATACAGCTCAGGAATCGGTG
CATGCGAAAGCATGTATTAATTCTAATAACTTATGTACGGCAGAAAATCTCGCTCGAGCAGATGTGGCTCAAGCGCAAGC
TAATGCTGGAAACTTTGGGATGCAGTTACGCATGGAGGTATGTCCAGGCGTAGCCAATGTGACGGGTGAAGAGACACGTA
TGTGTCTGTATGCAGCTTGGGGAGCAACAAATATAACGGCGAATACAACAGCATGTATGAATGCAACAGGTGTCTATGTG
GTTGGATCAAGCTGTTTGATGATGGAGCTATACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

48.045

100

0.503
  pilV Acinetobacter baylyi ADP1

40.462

100

0.409

Multiple sequence alignment