Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CF65_RS04450 Genome accession   NZ_CP007502
Coordinates   888181..888792 (-) Length   203 a.a.
NCBI ID   WP_230583193.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 883181..893792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS04440 (CF65_01305) - 885738..886583 (+) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CF65_RS04445 (CF65_01306) gorA 886678..888048 (+) 1371 WP_005566812.1 glutathione-disulfide reductase -
  CF65_RS04450 (CF65_01308) crp 888181..888792 (-) 612 WP_230583193.1 cAMP-activated global transcriptional regulator CRP Regulator
  CF65_RS04455 (CF65_01310) - 888863..889081 (-) 219 WP_005540236.1 YheU family protein -
  CF65_RS04460 (CF65_01311) slmA 889105..889704 (-) 600 WP_005540234.1 nucleoid occlusion factor SlmA -
  CF65_RS04465 (CF65_01313) dut 889704..890159 (-) 456 WP_005540230.1 dUTP diphosphatase -
  CF65_RS04470 (CF65_01315) coaBC 890228..891427 (-) 1200 WP_005566808.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CF65_RS04475 (CF65_01317) - 891605..891796 (+) 192 Protein_881 UPF0758 domain-containing protein -
  CF65_RS04480 (CF65_01318) - 892219..892473 (-) 255 WP_025298243.1 hypothetical protein -
  CF65_RS11490 (CF65_01319) - 892766..893464 (+) 699 WP_025298244.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23014.59 Da        Isoelectric Point: 7.8328

>NTDB_id=105073 CF65_RS04450 WP_230583193.1 888181..888792(-) (crp) [Aggregatibacter actinomycetemcomitans HK1651]
MDPTLEWFLSHCHIHKYPSKSTLINAGEKAETLYYLIQGSVSVLVKDEDGKEMILTYLSQGDFFGEAGLFEEGQRRSAWI
KAKSSCEVAEISYRKFRQLIQVNPEILMYLTAQLAYRLQNTSRQVSNLAFLDVTGRIAQTLLNLAKMPEAMTHPDGMQIK
ITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYGTR

Nucleotide


Download         Length: 612 bp        

>NTDB_id=105073 CF65_RS04450 WP_230583193.1 888181..888792(-) (crp) [Aggregatibacter actinomycetemcomitans HK1651]
ATGGATCCGACACTTGAGTGGTTTTTATCCCACTGCCACATCCATAAATATCCGTCTAAAAGCACATTAATCAACGCCGG
CGAAAAAGCCGAGACACTTTATTATTTAATTCAAGGCTCCGTGTCCGTTTTGGTCAAAGATGAAGACGGCAAAGAAATGA
TCCTCACCTATTTAAGCCAAGGGGATTTTTTCGGCGAAGCGGGCTTATTTGAAGAAGGACAACGCCGTTCTGCGTGGATT
AAAGCAAAATCCTCCTGCGAAGTGGCGGAAATTTCTTATCGTAAATTTCGCCAGCTGATTCAAGTCAACCCTGAAATCCT
GATGTATCTTACTGCCCAATTAGCGTATCGGTTACAAAACACTTCGCGCCAAGTAAGTAATTTAGCCTTTTTAGATGTCA
CCGGTCGCATTGCGCAAACCTTGCTCAATCTGGCAAAAATGCCGGAAGCGATGACTCACCCGGACGGTATGCAAATTAAA
ATCACCCGCCAGGAAATCGGACAAATGGTCGGTTGTTCGCGGGAAACCGTCGGGCGTATTCTGAAAATGCTGGAAGATCA
ACACCTCATCTCGGCACACGGCAAAACCATCGTAGTTTACGGCACCCGCTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(135-199)

Cyclic nucleotide-binding domain (cNMP_binding)

(16-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

82.178

99.507

0.818
  crp Haemophilus influenzae Rd KW20

80.693

99.507

0.803
  crp Acinetobacter baumannii D1279779

47.236

98.03

0.463