Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CF65_RS04430 Genome accession   NZ_CP007502
Coordinates   882133..882942 (-) Length   269 a.a.
NCBI ID   WP_005544971.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 877133..887942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS04400 (CF65_01295) aroB 877409..878497 (-) 1089 WP_005544982.1 3-dehydroquinate synthase -
  CF65_RS04405 (CF65_01296) aroK 878521..879048 (-) 528 WP_005555432.1 shikimate kinase AroK -
  CF65_RS04410 (CF65_01297) comE 879262..880671 (-) 1410 WP_005566816.1 type IV pilus secretin PilQ Machinery gene
  CF65_RS04415 (CF65_01298) - 880691..881083 (-) 393 WP_005544975.1 hypothetical protein -
  CF65_RS04420 (CF65_01299) - 881083..881607 (-) 525 WP_005543969.1 hypothetical protein -
  CF65_RS04425 (CF65_01301) - 881604..882122 (-) 519 WP_025298239.1 PilN domain-containing protein -
  CF65_RS04430 (CF65_01303) comA 882133..882942 (-) 810 WP_005544971.1 hypothetical protein Machinery gene
  CF65_RS04435 (CF65_01304) - 883076..885643 (+) 2568 WP_005566815.1 penicillin-binding protein 1A -
  CF65_RS04440 (CF65_01305) - 885738..886583 (+) 846 WP_005566814.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31326.94 Da        Isoelectric Point: 6.1096

>NTDB_id=105072 CF65_RS04430 WP_005544971.1 882133..882942(-) (comA) [Aggregatibacter actinomycetemcomitans HK1651]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=105072 CF65_RS04430 WP_005544971.1 882133..882942(-) (comA) [Aggregatibacter actinomycetemcomitans HK1651]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCAGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGACGTGTTAGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.541

96.283

0.39
  comA Haemophilus influenzae 86-028NP

40.541

96.283

0.39

Multiple sequence alignment