Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   R8967_RS04540 Genome accession   NZ_AP028378
Coordinates   857752..858480 (-) Length   242 a.a.
NCBI ID   WP_041570288.1    Uniprot ID   A0A7U8A6E3
Organism   Campylobacter lari strain BCH-10973     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 852752..863480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8967_RS04500 (B10973_08580) holA 853420..854385 (+) 966 WP_070256790.1 DNA polymerase III subunit delta -
  R8967_RS04505 (B10973_08590) rpsF 854477..854851 (+) 375 WP_012661658.1 30S ribosomal protein S6 -
  R8967_RS04510 (B10973_08600) - 854855..855382 (+) 528 WP_070256788.1 single-stranded DNA-binding protein -
  R8967_RS04515 (B10973_08610) rpsR 855393..855653 (+) 261 WP_012661660.1 30S ribosomal protein S18 -
  R8967_RS04520 (B10973_08620) - 855705..856346 (+) 642 WP_012661661.1 MarC family protein -
  R8967_RS04525 (B10973_08630) - 856328..856750 (-) 423 WP_070256786.1 hypothetical protein -
  R8967_RS04530 (B10973_08640) - 856747..857475 (-) 729 WP_070256784.1 type II secretion system protein -
  R8967_RS04535 (B10973_08650) - 857459..857755 (-) 297 WP_012661664.1 hypothetical protein -
  R8967_RS04540 (B10973_08660) proC 857752..858480 (-) 729 WP_041570288.1 pyrroline-5-carboxylate reductase Machinery gene
  R8967_RS04545 (B10973_08670) fliW 858480..858875 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  R8967_RS04550 (B10973_08680) bamD 859052..859708 (+) 657 WP_012661667.1 outer membrane protein assembly factor BamD -
  R8967_RS04555 (B10973_08690) lon 859708..862086 (+) 2379 WP_070256782.1 endopeptidase La -
  R8967_RS04560 (B10973_08700) - 862098..863480 (-) 1383 WP_317728043.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26473.71 Da        Isoelectric Point: 7.2137

>NTDB_id=105072 R8967_RS04540 WP_041570288.1 857752..858480(-) (proC) [Campylobacter lari strain BCH-10973]
MSEIYILGNGAMASAIAKGIGDAYEVIIVARDLKKASSLNFKVISYNEFDMDNKNIILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAQFKASATAYLMENDLYKDEILSLLSTFGKAISLQNEKEFDIAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFGALFNHIHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=105072 R8967_RS04540 WP_041570288.1 857752..858480(-) (proC) [Campylobacter lari strain BCH-10973]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAGGTGATGCTTATGAGGTGAT
AATAGTTGCAAGAGATTTAAAAAAGGCAAGTAGTTTGAATTTCAAAGTCATATCATACAATGAGTTTGATATGGATAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCGTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTATTGATGCACAAAATTATATAAAAATTATGCCAAATACAGC
AGCCCAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAGACGAAATTTTATCATTGCTAAGTA
CTTTTGGTAAAGCTATAAGTTTACAAAATGAAAAAGAATTTGATATAGCTATGGTTTTGAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCTAATGCGGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCAAGTTTTGAAAGCTTTGGTGCTTTATTTAACCATATACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCGGCAG
GGGTGACTATAAGAGGGGTTGAGGCTTTAGAAAAAAGAGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8A6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment