Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8967_RS04480 Genome accession   NZ_AP028378
Coordinates   848534..849301 (-) Length   255 a.a.
NCBI ID   WP_070256796.1    Uniprot ID   A0A5L8LTM5
Organism   Campylobacter lari strain BCH-10973     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 843534..854301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8967_RS04455 (B10973_08490) flhA 844078..846237 (-) 2160 WP_070256803.1 flagellar biosynthesis protein FlhA -
  R8967_RS04460 (B10973_08500) - 846230..846634 (-) 405 WP_317728041.1 Rrf2 family transcriptional regulator -
  R8967_RS04465 (B10973_08510) rpsO 846810..847082 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  R8967_RS04470 (B10973_08520) - 847271..848164 (-) 894 WP_070256799.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8967_RS04475 (B10973_08530) ruvX 848151..848537 (-) 387 WP_070256798.1 Holliday junction resolvase RuvX -
  R8967_RS04480 (B10973_08540) dprA 848534..849301 (-) 768 WP_070256796.1 DNA-processing protein DprA Machinery gene
  R8967_RS04485 (B10973_08550) - 849288..850355 (-) 1068 WP_217360309.1 divergent polysaccharide deacetylase family protein -
  R8967_RS04490 (B10973_08560) ilvC 850357..851379 (-) 1023 WP_173776802.1 ketol-acid reductoisomerase -
  R8967_RS04495 (B10973_08570) - 851487..853427 (+) 1941 WP_173776801.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28677.30 Da        Isoelectric Point: 6.4987

>NTDB_id=105071 R8967_RS04480 WP_070256796.1 848534..849301(-) (dprA) [Campylobacter lari strain BCH-10973]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLIELVSLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKDESEGTNLLLATKKANLIHDFDEFVKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACV

Nucleotide


Download         Length: 768 bp        

>NTDB_id=105071 R8967_RS04480 WP_070256796.1 848534..849301(-) (dprA) [Campylobacter lari strain BCH-10973]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
ACTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTATTGAGTTAG
TATCTTTGTTAAAAAAAGCTAAGGTTTGTGTGGTAAGCGGTGGGGCTTTGGGGGTGGATATTCAAGCAGCTAAAATAGCT
TACCCTCAAACTATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAATACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCCTTAAGTGAAAACGAAGGAAATTACAAGGCAAAACCCTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGTGGCTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAGATGAAAGTGAAGGGACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAGTTTGTAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGCGAGGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTGGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAGCTT
GAGGGTTTGGTAGAGATATCTGGAGTGAAAATAAGAGCTTGTGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L8LTM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

44.758

97.255

0.435

Multiple sequence alignment