Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CF65_RS01760 Genome accession   NZ_CP007502
Coordinates   356068..356574 (-) Length   168 a.a.
NCBI ID   WP_005548120.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 351068..361574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS01740 (CF65_00506) srmB 351818..353149 (-) 1332 WP_005572001.1 ATP-dependent RNA helicase SrmB -
  CF65_RS01745 (CF65_00508) - 353239..353946 (+) 708 WP_005572000.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CF65_RS01750 (CF65_00511) pnuC 354021..354709 (-) 689 Protein_344 nicotinamide riboside transporter PnuC -
  CF65_RS01755 (CF65_00513) rluA 355090..355749 (+) 660 WP_005567062.1 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA -
  CF65_RS10905 (CF65_00514) - 355746..355898 (-) 153 WP_005548122.1 hypothetical protein -
  CF65_RS01760 (CF65_00516) luxS 356068..356574 (-) 507 WP_005548120.1 S-ribosylhomocysteine lyase Regulator
  CF65_RS01765 (CF65_00518) - 356788..357273 (-) 486 WP_005548119.1 YqaA family protein -
  CF65_RS01770 (CF65_00519) - 357276..357881 (-) 606 WP_025298136.1 sugar O-acetyltransferase -
  CF65_RS01775 (CF65_00521) - 357881..358483 (-) 603 WP_005567064.1 beta-phosphoglucomutase family hydrolase -
  CF65_RS01780 (CF65_00523) - 358612..358992 (+) 381 WP_005567066.1 PRD domain-containing protein -
  CF65_RS01800 (CF65_00527) rep 359508..361523 (-) 2016 WP_005567069.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18974.73 Da        Isoelectric Point: 5.9223

>NTDB_id=105059 CF65_RS01760 WP_005548120.1 356068..356574(-) (luxS) [Aggregatibacter actinomycetemcomitans HK1651]
MPLLDSFKVDHTRMKAPAVRIAKIMRTPKGDNITVFDLRFTIPNKENLPPKGIHTLEHLFAGFMRDHLNGKDVEIIDISP
MGCRTGFYMSLIGTPNETQIAQAWAASMQDILNVKKQSEIPELNEYQCGTYTEHSLEEAHQIAQNVLDRGIGVNKNEDLT
LDESLLKQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=105059 CF65_RS01760 WP_005548120.1 356068..356574(-) (luxS) [Aggregatibacter actinomycetemcomitans HK1651]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACCCGAATGAAGGCGCCTGCCGTACGTATTGCGAAGATCATGCGCAC
TCCAAAAGGAGACAATATCACCGTTTTTGATCTTCGTTTCACGATACCTAACAAAGAAAACTTGCCACCGAAAGGTATTC
ACACCCTTGAACATTTATTTGCCGGTTTTATGCGAGATCACTTAAATGGCAAGGATGTGGAAATTATCGATATTTCCCCG
ATGGGCTGTCGCACCGGTTTTTATATGTCCTTAATCGGCACTCCAAATGAAACCCAAATCGCACAGGCGTGGGCAGCTTC
GATGCAGGATATTCTGAATGTAAAGAAACAAAGCGAAATTCCTGAACTAAATGAGTACCAATGCGGCACTTACACCGAGC
ATTCTTTGGAAGAAGCACATCAAATCGCACAAAATGTGTTGGATCGCGGTATCGGCGTAAATAAAAATGAAGATTTAACC
TTAGACGAAAGCTTATTAAAACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.619

100

0.726

Multiple sequence alignment