Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R9A00_RS07325 Genome accession   NZ_AP028376
Coordinates   1423903..1424214 (-) Length   103 a.a.
NCBI ID   WP_317729359.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10927     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418903..1429214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS07305 (B10927_14460) ctsE 1419772..1421331 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  R9A00_RS07310 (B10927_14470) ctsX 1421321..1421908 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  R9A00_RS07315 (B10927_14480) ctsP 1421912..1422520 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R9A00_RS07320 (B10927_14490) ctsD 1422513..1423925 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R9A00_RS07325 (B10927_14500) ctsR 1423903..1424214 (-) 312 WP_317729359.1 transformation system protein Machinery gene
  R9A00_RS07330 (B10927_14510) nifJ 1424238..1427798 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R9A00_RS07335 (B10927_14520) - 1427891..1428532 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12448.40 Da        Isoelectric Point: 8.0096

>NTDB_id=105062 R9A00_RS07325 WP_317729359.1 1423903..1424214(-) (ctsR) [Campylobacter jejuni strain BCH-10927]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLKIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105062 R9A00_RS07325 WP_317729359.1 1423903..1424214(-) (ctsR) [Campylobacter jejuni strain BCH-10927]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAAAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment