Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEY2C_RS08460 Genome accession   NZ_CP169314
Coordinates   1743677..1744195 (-) Length   172 a.a.
NCBI ID   WP_003129252.1    Uniprot ID   A0A1V8Z0P0
Organism   Enterococcus gallinarum strain IFEGHNEK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1738677..1749195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2C_RS08440 (ACEY2C_08440) dnaB 1739748..1741118 (-) 1371 WP_003129256.1 replicative DNA helicase -
  ACEY2C_RS08445 (ACEY2C_08445) rplI 1741240..1741692 (-) 453 WP_003129255.1 50S ribosomal protein L9 -
  ACEY2C_RS08450 (ACEY2C_08450) - 1741706..1743157 (-) 1452 WP_005473080.1 DHH family phosphoesterase -
  ACEY2C_RS08455 (ACEY2C_08455) rpsR 1743417..1743653 (-) 237 WP_003129253.1 30S ribosomal protein S18 -
  ACEY2C_RS08460 (ACEY2C_08460) ssb 1743677..1744195 (-) 519 WP_003129252.1 single-stranded DNA-binding protein Machinery gene
  ACEY2C_RS08465 (ACEY2C_08465) rpsF 1744238..1744537 (-) 300 WP_003129251.1 30S ribosomal protein S6 -
  ACEY2C_RS08470 (ACEY2C_08470) gyrA 1744761..1747190 (-) 2430 WP_229073633.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18889.44 Da        Isoelectric Point: 4.7200

>NTDB_id=1050438 ACEY2C_RS08460 WP_003129252.1 1743677..1744195(-) (ssb) [Enterococcus gallinarum strain IFEGHNEK1]
MINNVVLVGRLTKDPDLRYTANGTGVASFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTESGGNTSYNTSGSSGFGNNSTNQNQSSQPSGMPNFDRDNSDPFGN
SSIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1050438 ACEY2C_RS08460 WP_003129252.1 1743677..1744195(-) (ssb) [Enterococcus gallinarum strain IFEGHNEK1]
TTGATTAATAATGTTGTATTAGTAGGAAGATTAACCAAAGATCCTGATTTACGATACACTGCTAACGGCACTGGCGTCGC
GTCTTTTACATTGGCTGTAAATCGTAATTTTACAAACCAAAGTGGAGAACGTGAAGCTGATTTCATCAATTGTGTGATTT
GGAGAAAACCTGCAGAAACACTGGCTAATTATGCTCGTAAGGGTACATTACTTGGTGTGACTGGAAGAATCCAAACACGT
TCTTATGACAATCAACAAGGACAACGTGTATATGTAACTGAAGTTGTAGCAGACAATTTTCAATTGTTAGAATCTCGAAA
TGCTTCTGAACAACGACGCACTACCGAAAGCGGTGGAAATACTTCGTATAATACTAGTGGTTCTTCTGGATTCGGAAACA
ATAGCACAAATCAAAATCAATCCTCTCAACCATCAGGAATGCCTAACTTTGATCGAGATAATTCTGATCCATTCGGAAAC
TCGTCAATTGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8Z0P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.628

0.384

Multiple sequence alignment