Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACETK7_RS20945 Genome accession   NZ_CP169287
Coordinates   4507492..4508823 (-) Length   443 a.a.
NCBI ID   WP_214378868.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18_CNT1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4502492..4513823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK7_RS20930 (ACETK7_20930) - 4502701..4505811 (+) 3111 WP_214378873.1 pilus assembly protein -
  ACETK7_RS20935 (ACETK7_20935) - 4505826..4506224 (+) 399 WP_214378871.1 type IV pilin protein -
  ACETK7_RS20940 (ACETK7_20940) thiO 4506281..4507381 (+) 1101 WP_214378869.1 glycine oxidase ThiO -
  ACETK7_RS20945 (ACETK7_20945) pilR 4507492..4508823 (-) 1332 WP_214378868.1 sigma-54 dependent transcriptional regulator Regulator
  ACETK7_RS20950 (ACETK7_20950) pilS 4508826..4510415 (-) 1590 WP_214378866.1 ATP-binding protein Regulator
  ACETK7_RS20955 (ACETK7_20955) - 4510405..4510638 (-) 234 WP_214378865.1 PP0621 family protein -
  ACETK7_RS20960 (ACETK7_20960) - 4510763..4511785 (-) 1023 WP_145316021.1 outer membrane protein assembly factor BamD -
  ACETK7_RS20965 (ACETK7_20965) rluD 4511937..4512899 (+) 963 WP_008028788.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACETK7_RS20970 (ACETK7_20970) pgeF 4512896..4513615 (+) 720 WP_214378863.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49537.94 Da        Isoelectric Point: 7.1427

>NTDB_id=1050224 ACETK7_RS20945 WP_214378868.1 4507492..4508823(-) (pilR) [Pseudomonas hormoni strain G20-18_CNT1]
MSPLQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLKRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLPVA
MITAYGNLETAINALKAGAFDFLTKPVDLTRLRALVTSALRMPAPGVTVDRRLLGDSLPMRNLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHEQGSRANQPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLAAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLATHVLK
RLAAGSGQPATKLHPQALEALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCTADSGVQDLTQIDNLEDYL
DNVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=1050224 ACETK7_RS20945 WP_214378868.1 4507492..4508823(-) (pilR) [Pseudomonas hormoni strain G20-18_CNT1]
ATGAGCCCACTGCAAAAAGTCCTGATTGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATTACCCTGGGACGAAT
GAAACTCGACACCTTCAGCGCCCGCAACCTTGGCGAAGCCCAGGCCCTGTTGAAACGCGAAACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCACCGGCCTTGAGCTGGTGCAACACATTCAGCAACGCTATCCCCAACTGCCGGTGGCC
ATGATCACCGCTTACGGCAACCTCGAAACGGCGATCAACGCTCTCAAGGCCGGTGCTTTCGACTTCCTGACCAAACCGGT
GGACCTCACCCGCCTGCGCGCACTGGTCACCAGCGCACTGCGTATGCCCGCGCCGGGCGTCACCGTCGATCGTCGTTTGC
TGGGCGACTCGTTGCCCATGCGCAATTTGCGTAAACAAATCGACAAGCTGGCCCGCAGTCAGGCGCCGGTGTATATCAGC
GGCGAGTCCGGCAGTGGCAAGGAACTGGTCGCCCGGCTGATCCATGAACAAGGGTCGCGCGCCAACCAGCCGTTTATCCC
GGTGAACTGCGGGGCGATCCCTTCGGAACTGATGGAGAGCGAATTTTTCGGGCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAGCCCGGGCTGTTCCAGGCAGCCCATGGCGGCACGCTGTTCCTCGACGAAGTGGCTGATTTACCTCTGGCG
ATGCAAGTCAAACTGTTGCGGGCGATTCAGGAAAAGGCCGTTCGCAGCGTGGGCGGGCAACAGGAAACCGTGGTGGATGT
GCGCATCCTCTGTGCCACCCACAAAGACCTCGCCGCCGAAGTCGCCGCCGAACGCTTTCGCCAGGATCTGTACTACCGAC
TCAACGTTATCGAACTACGGGTTCCGCCCTTGCGCGAACGCCGCGACGACATCGAATCGTTGGCCACTCATGTCCTCAAG
CGTCTGGCAGCCGGCAGCGGCCAGCCCGCCACGAAACTCCACCCGCAAGCGCTTGAAGCGCTGAAAAGCTATCGCTTTCC
GGGCAACGTGCGAGAGCTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAAAACAAGCAGATCGAAGCCAGCGACC
TGCGACTGGCCGAAGGCAACTGCACCGCAGACAGTGGGGTGCAGGACCTGACGCAGATCGACAATCTGGAAGACTATCTG
GACAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCAGCTCAGCGGTTAAA
TTTGTCGTTTCGGTCGATGCGTTACAGGCTGAAGAAGTTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.507

99.774

0.783
  pilR Acinetobacter baumannii strain A118

49.565

100

0.515

Multiple sequence alignment