Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACETK7_RS20950 Genome accession   NZ_CP169287
Coordinates   4508826..4510415 (-) Length   529 a.a.
NCBI ID   WP_214378866.1    Uniprot ID   -
Organism   Pseudomonas hormoni strain G20-18_CNT1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4503826..4515415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETK7_RS20935 (ACETK7_20935) - 4505826..4506224 (+) 399 WP_214378871.1 type IV pilin protein -
  ACETK7_RS20940 (ACETK7_20940) thiO 4506281..4507381 (+) 1101 WP_214378869.1 glycine oxidase ThiO -
  ACETK7_RS20945 (ACETK7_20945) pilR 4507492..4508823 (-) 1332 WP_214378868.1 sigma-54 dependent transcriptional regulator Regulator
  ACETK7_RS20950 (ACETK7_20950) pilS 4508826..4510415 (-) 1590 WP_214378866.1 ATP-binding protein Regulator
  ACETK7_RS20955 (ACETK7_20955) - 4510405..4510638 (-) 234 WP_214378865.1 PP0621 family protein -
  ACETK7_RS20960 (ACETK7_20960) - 4510763..4511785 (-) 1023 WP_145316021.1 outer membrane protein assembly factor BamD -
  ACETK7_RS20965 (ACETK7_20965) rluD 4511937..4512899 (+) 963 WP_008028788.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACETK7_RS20970 (ACETK7_20970) pgeF 4512896..4513615 (+) 720 WP_214378863.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58423.09 Da        Isoelectric Point: 6.4491

>NTDB_id=1050225 ACETK7_RS20950 WP_214378866.1 4508826..4510415(-) (pilS) [Pseudomonas hormoni strain G20-18_CNT1]
MIAETSSPGSKQAQRLLRLYHLYRLSVGITLVLLISSNLDNQLLTFSNDDLLRSGSWLYLVLNILLVVFFENTHRPAQLF
GLALIDVLLLCGLFYAAGGVASAIGNLLIVSVAISNALLRSRIGLLIAAVGALGIVGLSLLLSFSHPATPNDYLQVGTLG
ALCFAAALLVQGLIQRVEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDDQRRVQLANHSAQVLLGRDNLEGQRID
DYSPALVERLQLWLNNPTLRPQSLKVTGSGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEQFVAESREGALDR
QQIHLHIGSGDFKTLMDPNQLTQIIDNLLRNAWRHSAQTHDQAQVWLDLFIDPDTQLPIIEVLDDGPGVAPDQQVHLFEP
FFTTSAQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1050225 ACETK7_RS20950 WP_214378866.1 4508826..4510415(-) (pilS) [Pseudomonas hormoni strain G20-18_CNT1]
GTGATCGCTGAGACGTCCAGTCCCGGCAGCAAACAGGCTCAGCGACTGCTGCGCCTTTATCATCTCTACCGCTTAAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACCTCGACAACCAGTTGCTGACATTCTCCAATGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAACATTCTGCTGGTGGTCTTTTTTGAGAACACCCACCGCCCTGCGCAGTTATTC
GGCCTGGCACTGATCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCCGGTGGTGTCGCCAGCGCCATTGGCAACCT
GCTGATCGTCTCGGTGGCTATCAGCAATGCCTTGTTGCGAAGTCGTATCGGCCTGCTGATTGCCGCCGTCGGCGCACTCG
GTATCGTCGGGCTAAGCCTTCTCCTGAGCTTCAGCCATCCCGCCACCCCTAACGATTATCTGCAAGTCGGTACGCTCGGT
GCGCTGTGTTTTGCCGCGGCATTGCTGGTGCAAGGGCTGATCCAGCGGGTGGAAGTCAGCGAAACCCTCGCCGAGCAACG
GGCCAGTGAAGTCGTGGGCCTGGAAGCCCTTAATGCGTTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTCGACG
ACCAGCGGCGAGTGCAACTGGCCAATCACAGCGCCCAGGTCCTGTTGGGCCGGGACAACCTCGAAGGCCAACGGATCGAT
GACTACTCACCCGCTCTCGTCGAGCGCCTGCAACTGTGGCTGAACAACCCGACGCTGCGCCCTCAAAGCCTGAAAGTCAC
CGGCAGCGGCCTGGAACTGCAACCGAGTTTCATTGCCCTGGACCAAAGCCCACACCATCAAACCCTGGTTTTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCCCAACAACTGAAACTCGCCGCACTTGGCCGCCTGACCGCCGGGATCGCCCACGAA
ATACGCAATCCACTGGGCGCCATTAGTCACGCCGCTCAGCTATTGCAGGAATCCGAGGAACTGAACGGCGCGGACCGGCG
TCTGACCCAGATTATTCAAGATCACTCTCAGCGTATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTGCCGCAACGGCTTGATCTGAAGCCGTGGCTGGAGCAGTTCGTTGCAGAAAGTCGCGAAGGTGCGCTCGACCGC
CAGCAGATTCATCTGCATATCGGCTCGGGAGACTTCAAAACCCTGATGGACCCGAACCAGCTGACCCAGATTATCGATAA
CCTGCTGCGCAATGCCTGGCGCCACAGCGCTCAAACCCACGATCAGGCGCAGGTCTGGCTTGATCTGTTTATCGACCCCG
ACACGCAGTTGCCCATCATCGAAGTTCTGGACGATGGCCCCGGCGTGGCGCCGGATCAGCAGGTGCATCTGTTCGAACCG
TTCTTCACCACCAGCGCCCAAGGCACAGGCCTGGGGCTTTATCTGTCCCGTGAACTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597

Multiple sequence alignment