Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AKG93_RS15135 Genome accession   NZ_CP169261
Coordinates   3283942..3284586 (+) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain VH2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3278942..3289586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKG93_RS15120 (AKG93_015120) - 3280051..3281604 (-) 1554 WP_053052662.1 site-specific integrase -
  AKG93_RS15125 (AKG93_015125) - 3281611..3283029 (-) 1419 WP_235503798.1 tyrosine-type recombinase/integrase -
  AKG93_RS15130 (AKG93_015130) ssb 3283108..3283647 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  AKG93_RS15135 (AKG93_015135) qstR 3283942..3284586 (+) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  AKG93_RS15140 (AKG93_015140) galU 3284748..3285620 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AKG93_RS15145 (AKG93_015145) uvrA 3285758..3288580 (+) 2823 WP_053052664.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=1050049 AKG93_RS15135 WP_009698824.1 3283942..3284586(+) (qstR) [Vibrio harveyi strain VH2]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1050049 AKG93_RS15135 WP_009698824.1 3283942..3284586(+) (qstR) [Vibrio harveyi strain VH2]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCACTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment