Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACEUIV_RS16730 Genome accession   NZ_CP169221
Coordinates   3660302..3661165 (+) Length   287 a.a.
NCBI ID   WP_022995250.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain A28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655302..3666165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUIV_RS16715 - 3656469..3656906 (-) 438 WP_026948629.1 pilin -
  ACEUIV_RS16720 pilB 3657268..3658980 (+) 1713 WP_022995252.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEUIV_RS16725 pilC 3659051..3660274 (+) 1224 WP_022995251.1 type II secretion system F family protein Machinery gene
  ACEUIV_RS16730 pilD 3660302..3661165 (+) 864 WP_022995250.1 A24 family peptidase Machinery gene
  ACEUIV_RS16735 coaE 3661379..3661984 (+) 606 WP_022995249.1 dephospho-CoA kinase -
  ACEUIV_RS16740 - 3661974..3662168 (+) 195 WP_022995248.1 DNA gyrase inhibitor YacG -
  ACEUIV_RS16745 - 3662169..3663119 (-) 951 WP_026948627.1 Nudix family hydrolase -
  ACEUIV_RS16750 argJ 3663122..3664327 (-) 1206 WP_116027134.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31407.47 Da        Isoelectric Point: 7.2176

>NTDB_id=1049881 ACEUIV_RS16730 WP_022995250.1 3660302..3661165(+) (pilD) [Alloalcanivorax xenomutans strain A28]
MFSFLADQPALLILFCTVFGLLVGSFLNVVIHRVPRMMERTWRREAQEVLELPIEETSPYNLVVPRSRCPHCDHAIRWHE
NIPVVSWLLLKGRCSACGQGISARYPLVELLSALIAAVCAWQFGYGGWLIFVLFASFTLLALAAIDLDTTLLPDAMTFPL
LWAGLLAALLGISPVALPDAVVGAMAGYLSLWSLYWVFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPLVILLSSVVGLV
FAIGMMARGGLKKGQGIPFGPYLAIAGWIALLWGDTIVGAYLGLFQF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1049881 ACEUIV_RS16730 WP_022995250.1 3660302..3661165(+) (pilD) [Alloalcanivorax xenomutans strain A28]
GTGTTTAGCTTTCTCGCCGACCAGCCCGCACTGCTCATTCTCTTCTGTACCGTGTTCGGGCTGCTGGTGGGCAGCTTTCT
CAATGTGGTGATTCACCGCGTTCCGCGAATGATGGAGCGCACCTGGCGGCGCGAAGCCCAGGAAGTGCTGGAACTGCCCA
TCGAGGAAACCAGCCCTTACAACCTGGTGGTGCCCCGTTCCCGCTGCCCGCATTGCGACCACGCCATTCGCTGGCATGAG
AACATCCCGGTGGTCAGTTGGCTGCTGTTGAAGGGACGCTGCAGCGCCTGCGGCCAGGGCATCAGTGCCCGCTATCCCTT
GGTCGAGTTGCTCAGCGCCCTGATCGCCGCTGTTTGCGCCTGGCAGTTTGGCTATGGGGGCTGGCTGATATTCGTGCTGT
TCGCCAGCTTTACCCTGCTGGCATTGGCGGCCATCGATCTGGATACCACGCTGCTCCCTGATGCCATGACCTTCCCGCTG
CTGTGGGCAGGTTTGCTGGCGGCGCTGCTGGGCATCTCGCCGGTTGCCCTGCCGGACGCCGTCGTCGGCGCCATGGCCGG
TTATCTGTCGTTGTGGAGCCTGTACTGGGTATTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCAAAC
TGCTCGCCGCGCTGGGCGCCTGGCTGGGCTGGCAATATCTGCCGCTGGTGATTCTGTTGTCCTCGGTGGTGGGTCTGGTG
TTCGCCATTGGCATGATGGCTCGTGGTGGCCTCAAAAAGGGTCAGGGCATTCCCTTCGGCCCCTATCTGGCCATTGCCGG
CTGGATCGCGCTGTTATGGGGCGACACCATCGTCGGTGCTTATCTGGGTCTGTTTCAATTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-243)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

58.781

97.213

0.571
  pilD Vibrio campbellii strain DS40M4

56.159

96.167

0.54
  pilD Acinetobacter nosocomialis M2

48.592

98.955

0.481
  pilD Acinetobacter baumannii D1279779

48.592

98.955

0.481
  pilD Neisseria gonorrhoeae MS11

51.527

91.289

0.47

Multiple sequence alignment