Detailed information NTG1049856

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACEPPP_RS11845
• Genome accession: NZ_CP169217
• Coordinates: 2681586..2682932 (-)
• Length: 448 a.a.
• NCBI ID: WP_374086940.1
• Uniprot ID: -
• Organism: Methylomicrobium lacus strain 22M6SE5-12
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2676586..2687932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPPP_RS11825 (ACEPPP_11825)	pepP	2677063..2678373 (+)	1311	WP_374086934.1	Xaa-Pro aminopeptidase	-
ACEPPP_RS11830 (ACEPPP_11830)	ubiH	2678373..2679584 (+)	1212	WP_374086935.1	2-octaprenyl-6-methoxyphenyl hydroxylase	-
ACEPPP_RS11835 (ACEPPP_11835)	-	2679590..2680810 (+)	1221	WP_374086937.1	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	-
ACEPPP_RS11840 (ACEPPP_11840)	-	2680958..2681443 (+)	486	WP_374086938.1	hypothetical protein	-
ACEPPP_RS11845 (ACEPPP_11845)	pilR	2681586..2682932 (-)	1347	WP_374086940.1	sigma-54-dependent transcriptional regulator	Regulator
ACEPPP_RS11850 (ACEPPP_11850)	-	2682936..2684558 (-)	1623	WP_374086941.1	nitrogen regulation protein NR(II)	-
ACEPPP_RS11855 (ACEPPP_11855)	sucC	2684685..2685854 (+)	1170	WP_374086943.1	ADP-forming succinate--CoA ligase subunit beta	-
ACEPPP_RS11860 (ACEPPP_11860)	sucD	2685851..2686726 (+)	876	WP_374086947.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49784.42 Da
• Isoelectric Point: 7.1989

>NTDB_id=1049856 ACEPPP_RS11845 WP_374086940.1 2681586..2682932(-) (pilR) [Methylomicrobium lacus strain 22M6SE5-12]
MKNPFALIVDDEPDIIELLEITLTRMGIETRSAGTLGQAKKLLQERTFDLCLTDLRLPDGDGLELVELIQTSRTPFPIAV
ITAHGNMDTAITAMKKGAFDFVSKPVDLLTLRQLVGNALKFAEQAPRKDRRTRHTLLGDSLAMRGIRSKITKLARSQAPV
YIHGESGAGKELVARLIHQQSTRSDKPFVAINCGAIPHELMESEFFGHKKGSFTGAIGDKKGLFQAADGGTLFLDEIADL
PASLQVKLLRAIQEKKIRPVGEQQEIPVDVRLLSATHRNLAEMVQNGSFRQDLFYRINVIDLDVPPLRERIDDIPVLVDH
ILSKLSGQPESKPAISPAAIAALQRYRFPGNIRELENILERALALYDGKCIEEDDLNLPVGIPVPNPAPEHGYDPCQGSL
EDYLEAIERKAILQALKENKWNKTAAAKQLGLSFRSFRYRLKKLDLDN

Nucleotide

• Length: 1347 bp

>NTDB_id=1049856 ACEPPP_RS11845 WP_374086940.1 2681586..2682932(-) (pilR) [Methylomicrobium lacus strain 22M6SE5-12]
ATGAAAAATCCCTTTGCCTTGATCGTCGATGACGAGCCCGACATCATCGAATTACTCGAAATCACGCTCACCCGGATGGG
TATCGAAACCCGCAGCGCGGGGACGCTCGGTCAAGCCAAAAAATTATTGCAGGAGCGCACCTTCGACCTGTGTCTGACCG
ATTTGAGATTGCCCGACGGCGACGGCCTCGAACTGGTCGAGCTGATACAGACCTCCAGGACGCCGTTTCCGATTGCGGTG
ATTACCGCGCACGGCAACATGGATACCGCGATCACCGCGATGAAAAAAGGCGCTTTCGATTTCGTCTCCAAGCCGGTCGA
TCTCTTGACGCTCAGGCAGCTGGTCGGCAACGCGCTCAAATTCGCCGAACAAGCGCCGCGCAAAGACAGGCGCACGCGCC
ATACCTTGCTCGGCGATTCGTTGGCAATGCGCGGGATCCGCTCCAAAATCACCAAGCTCGCGCGTAGCCAGGCGCCGGTC
TATATTCACGGCGAATCCGGCGCCGGCAAGGAACTGGTCGCGCGCTTGATACATCAGCAGAGCACGCGCAGCGACAAGCC
CTTCGTCGCGATCAACTGCGGCGCGATTCCGCACGAACTGATGGAAAGCGAATTTTTCGGCCATAAGAAAGGCAGCTTTA
CCGGCGCGATCGGCGACAAAAAAGGGCTGTTCCAGGCCGCGGACGGCGGCACGCTGTTTCTCGACGAAATCGCCGATCTG
CCGGCCTCCTTGCAGGTCAAACTGCTCCGGGCGATTCAGGAGAAGAAGATCCGTCCGGTCGGGGAACAGCAGGAAATCCC
GGTCGACGTGCGCCTCTTGAGCGCGACGCACCGGAATCTGGCCGAAATGGTGCAGAACGGCAGTTTCCGGCAAGACCTGT
TTTACCGGATCAATGTAATCGATCTCGATGTGCCGCCACTGCGCGAACGCATCGACGACATACCCGTACTGGTCGATCAT
ATCCTGAGTAAACTGAGCGGGCAGCCGGAGAGCAAGCCGGCCATTTCGCCTGCGGCAATCGCCGCGCTGCAACGCTACCG
CTTTCCGGGCAATATCCGCGAACTTGAAAACATCCTCGAAAGGGCGCTGGCATTGTATGACGGCAAGTGCATCGAAGAGG
ACGACCTGAATCTGCCGGTCGGCATTCCGGTGCCGAACCCTGCGCCGGAACACGGCTACGACCCGTGTCAGGGCTCGCTC
GAGGATTATTTGGAAGCGATCGAAAGAAAGGCGATTCTGCAAGCGCTCAAAGAAAACAAATGGAATAAGACGGCGGCTGC
CAAACAGCTCGGATTGTCGTTCCGCTCGTTCCGGTATCGGCTGAAAAAGCTCGATTTGGATAATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.927	100	0.616
pilR	Acinetobacter baumannii strain A118	51.293	100	0.531
luxO	Vibrio cholerae strain A1552	37.225	100	0.377