Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACEJ41_RS10160 Genome accession   NZ_CP169056
Coordinates   2220169..2221587 (+) Length   472 a.a.
NCBI ID   WP_374012161.1    Uniprot ID   -
Organism   Pseudoxanthomonas koreensis strain TDY-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215169..2226587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEJ41_RS10145 (ACEJ41_10145) sucD 2216032..2216907 (-) 876 WP_374012158.1 succinate--CoA ligase subunit alpha -
  ACEJ41_RS10150 (ACEJ41_10150) sucC 2217079..2218239 (-) 1161 WP_374012159.1 ADP-forming succinate--CoA ligase subunit beta -
  ACEJ41_RS10155 (ACEJ41_10155) - 2218542..2220143 (+) 1602 WP_374012160.1 PAS domain-containing sensor histidine kinase -
  ACEJ41_RS10160 (ACEJ41_10160) pilR 2220169..2221587 (+) 1419 WP_374012161.1 sigma-54-dependent transcriptional regulator Regulator
  ACEJ41_RS10165 (ACEJ41_10165) rsmA 2221649..2222431 (+) 783 WP_374012162.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  ACEJ41_RS10170 (ACEJ41_10170) apaG 2222521..2222907 (+) 387 WP_374012163.1 Co2+/Mg2+ efflux protein ApaG -
  ACEJ41_RS10175 (ACEJ41_10175) - 2222918..2223769 (+) 852 WP_374012164.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  ACEJ41_RS10180 (ACEJ41_10180) - 2223903..2224451 (-) 549 WP_374012165.1 dihydrofolate reductase -
  ACEJ41_RS10185 (ACEJ41_10185) - 2224448..2225242 (-) 795 WP_374012166.1 thymidylate synthase -
  ACEJ41_RS10190 (ACEJ41_10190) lgt 2225239..2226126 (-) 888 WP_374012167.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50936.43 Da        Isoelectric Point: 6.5087

>NTDB_id=1049603 ACEJ41_RS10160 WP_374012161.1 2220169..2221587(+) (pilR) [Pseudoxanthomonas koreensis strain TDY-1]
MPASPLSSCAMTQSRSALIVDDERDIRELLVLTLGRMGLRVDTAANLSEARELLGRGHYDLCLTDMRLPDGNGIELVGEI
ARHHPQTPVAMITAFGNMDLAVEALKAGAFDFVSKPVDINVLRGLVRHALELNNSERLRAAPPQEQASRLLGDSAAMDTL
RATIAKVARSQAPVYILGESGVGKELVARTIHEQGARTAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQA
ASGGTLFLDEVAELPLAMQVKLLRAIQEKSVRPVGAPGEVPVDVRILSATHKDLGALVADGRFRHDLYYRINVIELRVPP
LRERTGDLPQLAHAILARLAAGQERHPPELTEAALAALASYPFPGNVRELENVLERALAMADGDRVDAADLHLPQVPVRL
GAESGPAHAAHQEAVLDLDPGTGALPSYIEQLERAAIQKALEDNRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=1049603 ACEJ41_RS10160 WP_374012161.1 2220169..2221587(+) (pilR) [Pseudoxanthomonas koreensis strain TDY-1]
ATGCCGGCCAGTCCGCTATCGTCTTGCGCCATGACCCAGAGCCGCAGCGCCCTTATCGTCGACGACGAACGCGACATCCG
CGAGCTGCTGGTCCTCACCCTGGGCCGCATGGGCCTGCGCGTGGATACCGCCGCCAACCTGAGCGAGGCGCGCGAGCTGC
TGGGTCGCGGCCACTACGACCTGTGCCTGACCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTGGGCGAGATC
GCGCGCCACCACCCGCAGACCCCGGTGGCCATGATCACCGCCTTCGGCAACATGGACCTGGCGGTGGAGGCGCTGAAGGC
GGGGGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAACGTGCTGCGCGGCCTGGTCCGGCACGCGCTGGAACTGAACA
ACAGCGAGCGCCTGCGCGCCGCGCCACCGCAGGAGCAGGCCAGCCGCCTGCTCGGCGACTCCGCGGCCATGGACACCCTG
CGCGCCACCATCGCCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACATCCTGGGCGAGTCGGGCGTGGGCAAGGAGCTGGT
TGCGCGCACCATCCACGAGCAGGGCGCACGCACGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAAC
TCATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCC
GCCAGCGGCGGCACCCTGTTCCTGGACGAGGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCA
GGAAAAGTCGGTGCGTCCGGTCGGCGCGCCCGGCGAGGTGCCGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGATC
TTGGCGCGCTGGTGGCCGACGGCCGCTTCCGCCACGACCTGTACTACCGGATCAACGTGATCGAGCTGCGGGTGCCGCCG
CTGCGCGAGCGCACCGGCGACCTGCCGCAACTGGCCCACGCCATCCTCGCCCGCCTGGCCGCCGGCCAGGAGCGGCATCC
GCCCGAACTGACCGAGGCGGCGCTGGCCGCACTGGCCAGCTACCCCTTCCCCGGCAATGTGCGCGAACTGGAGAACGTGC
TCGAGCGCGCACTGGCCATGGCCGATGGTGACCGCGTCGACGCGGCCGACCTGCACCTGCCGCAGGTCCCGGTCCGGCTT
GGCGCCGAATCCGGCCCGGCCCACGCCGCGCACCAGGAAGCGGTGCTGGACCTGGATCCAGGCACCGGCGCCCTGCCCTC
CTACATCGAGCAACTGGAGCGCGCGGCCATCCAGAAGGCGCTGGAGGACAATCGCTGGAACAAGACCCGCACCGCCGCGC
AGTTGGGCATCACCTTCCGCGCGTTGCGCTACAAGCTCAAGAAGCTGGGGATGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-125)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(151-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.256

97.669

0.608
  pilR Acinetobacter baumannii strain A118

49.138

98.305

0.483

Multiple sequence alignment