Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACEUKD_RS04810 Genome accession   NZ_CP169050
Coordinates   1024147..1026405 (+) Length   752 a.a.
NCBI ID   WP_374092662.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SF42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019147..1031405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEUKD_RS04785 (ACEUKD_04785) - 1019506..1020075 (-) 570 WP_006742154.1 hypothetical protein -
  ACEUKD_RS04790 (ACEUKD_04790) lolC 1020325..1021533 (+) 1209 WP_374092658.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACEUKD_RS04795 (ACEUKD_04795) lolD 1021526..1022233 (+) 708 WP_374092659.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACEUKD_RS04800 (ACEUKD_04800) lolE 1022236..1023480 (+) 1245 WP_374092660.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACEUKD_RS04805 (ACEUKD_04805) - 1023629..1024138 (-) 510 WP_374092661.1 DUF2062 domain-containing protein -
  ACEUKD_RS04810 (ACEUKD_04810) comEC 1024147..1026405 (+) 2259 WP_374092662.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACEUKD_RS04815 (ACEUKD_04815) msbA 1026437..1028185 (+) 1749 WP_006742148.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACEUKD_RS04820 (ACEUKD_04820) lpxK 1028191..1029198 (+) 1008 WP_374092663.1 tetraacyldisaccharide 4'-kinase -
  ACEUKD_RS04825 (ACEUKD_04825) - 1029179..1029358 (+) 180 WP_005390649.1 Trm112 family protein -
  ACEUKD_RS04830 (ACEUKD_04830) kdsB 1029358..1030113 (+) 756 WP_005390653.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84438.47 Da        Isoelectric Point: 8.3548

>NTDB_id=1049539 ACEUKD_RS04810 WP_374092662.1 1024147..1026405(+) (comEC) [Vibrio diabolicus strain SF42]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSILARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGAIRYTLPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCIIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQNGGWKAKLKVLLLTQLILSVLIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWQLVDWSLQPLSTSIQYAIGSWQPISIEMTGLILAGIICLVFQRFMFQYAWCLLL
GIVISIKLTSEYGQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYEIIDTMILSHSDND
HAGGRLFIEDAFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVAAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1049539 ACEUKD_RS04810 WP_374092662.1 1024147..1026405(+) (comEC) [Vibrio diabolicus strain SF42]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCCGAAAAGCACGCAATG
GGTAAAAGTATTCTCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGCTCTACTACATCTTTGCGCCAAGC
AATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTCACTTTTGGGCTAGTAGTGGGCGGTGCCATTCGTTATACGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCGGTATGTA
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGTTGTTCGCAATCAA
TTTGATTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGCTATTGCTTACTCAATTGATTCTGAGTGTGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGCCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAACCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTATTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGGTCAGCAACATTGGCGCATTGATGTATTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAATCATCGATACGATGATCCTCAGCCATTCCGACAATGAC
CATGCAGGAGGACGCTTGTTCATTGAAGATGCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCCTGTGTACTACGCCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAGGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTGCAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.745

100

0.707
  comEC Vibrio campbellii strain DS40M4

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

42.119

100

0.423

Multiple sequence alignment