Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACEQ85_RS04785 Genome accession   NZ_CP168966
Coordinates   1012705..1013109 (-) Length   134 a.a.
NCBI ID   WP_005066267.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1007705..1018109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS04755 (ACEQ85_04755) - 1007789..1008058 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACEQ85_RS04760 (ACEQ85_04760) rapZ 1008055..1008906 (-) 852 WP_005066272.1 RNase adapter RapZ -
  ACEQ85_RS04765 (ACEQ85_04765) panC 1008930..1009778 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  ACEQ85_RS04770 (ACEQ85_04770) panB 1009782..1010591 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACEQ85_RS04775 (ACEQ85_04775) folK 1010637..1011119 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACEQ85_RS04780 (ACEQ85_04780) pcnB 1011116..1012579 (-) 1464 WP_005066269.1 polynucleotide adenylyltransferase PcnB -
  ACEQ85_RS04785 (ACEQ85_04785) comEA 1012705..1013109 (-) 405 WP_005066267.1 ComEA family DNA-binding protein Machinery gene
  ACEQ85_RS04790 (ACEQ85_04790) mazG 1013078..1013884 (-) 807 WP_101664085.1 nucleoside triphosphate pyrophosphohydrolase -
  ACEQ85_RS04795 (ACEQ85_04795) - 1013997..1014770 (+) 774 WP_202724503.1 SDR family oxidoreductase -
  ACEQ85_RS04800 (ACEQ85_04800) - 1015292..1016605 (+) 1314 WP_373883734.1 COG3014 family protein -
  ACEQ85_RS04805 (ACEQ85_04805) - 1016625..1017035 (+) 411 WP_063098121.1 YcfL family protein -
  ACEQ85_RS04810 (ACEQ85_04810) lpoB 1017089..1017691 (+) 603 WP_063098120.1 penicillin-binding protein activator LpoB -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15454.70 Da        Isoelectric Point: 10.5869

>NTDB_id=1048969 ACEQ85_RS04785 WP_005066267.1 1012705..1013109(-) (comEA) [Acinetobacter pittii strain LS-AP]
MQLSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1048969 ACEQ85_RS04785 WP_005066267.1 1012705..1013109(-) (comEA) [Acinetobacter pittii strain LS-AP]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCAACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCACTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403

Multiple sequence alignment