Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABGU55_RS05735 Genome accession   NZ_OZ039045
Coordinates   1169545..1170282 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 30224_1#201     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164545..1175282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU55_RS05705 yfiL 1164704..1165069 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  ABGU55_RS05710 aroF 1165279..1166349 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABGU55_RS05715 tyrA 1166360..1167481 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABGU55_RS05720 pheA 1167524..1168684 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABGU55_RS05725 pheL 1168783..1168830 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABGU55_RS05730 raiA 1168934..1169275 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABGU55_RS05735 comL 1169545..1170282 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABGU55_RS05740 rluD 1170417..1171397 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABGU55_RS05745 yfiH 1171394..1172125 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ABGU55_RS05750 clpC 1172255..1174828 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1048817 ABGU55_RS05735 WP_000197686.1 1169545..1170282(-) (comL) [Escherichia coli isolate 30224_1#201]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1048817 ABGU55_RS05735 WP_000197686.1 1169545..1170282(-) (comL) [Escherichia coli isolate 30224_1#201]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376