Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABNR97_RS11175 Genome accession   NZ_OZ021676
Coordinates   2149730..2150179 (+) Length   149 a.a.
NCBI ID   WP_002214937.1    Uniprot ID   Q9JXJ2
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144730..2155179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS11165 - 2149027..2149146 (+) 120 Protein_2162 competence protein ComE -
  ABNR97_RS11170 - 2149248..2149642 (+) 395 Protein_2163 helix-hairpin-helix domain-containing protein -
  ABNR97_RS11175 comP 2149730..2150179 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  ABNR97_RS11180 - 2151089..2151679 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  ABNR97_RS11185 - 2151718..2152047 (+) 330 WP_002234365.1 DNA cytosine methyltransferase -
  ABNR97_RS11190 - 2152061..2152918 (+) 858 WP_012503917.1 ATP-binding protein -
  ABNR97_RS11195 - 2153108..2153704 (+) 597 WP_012503916.1 TIGR02391 family protein -
  ABNR97_RS11200 - 2153710..2154132 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.81 Da        Isoelectric Point: 9.7951

>NTDB_id=1048112 ABNR97_RS11175 WP_002214937.1 2149730..2150179(+) (comP) [Neisseria gonorrhoeae isolate SGC-23-001]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1048112 ABNR97_RS11175 WP_002214937.1 2149730..2150179(+) (comP) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JXJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

100

100

1
  comP Neisseria meningitidis 8013

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.66

98.658

0.49