NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	ABNR97_RS08125	Genome accession	NZ_OZ021676
Coordinates	1551893..1552477 (-)	Length	194 a.a.
NCBI ID	WP_003694238.1	Uniprot ID	-
Organism	Neisseria gonorrhoeae isolate SGC-23-001
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1546893..1557477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNR97_RS08095	-	1547313..1547612 (+)	300	WP_010359269.1	DUF2818 family protein	-
ABNR97_RS08100	-	1547729..1548625 (-)	897	WP_003689930.1	polyprenyl synthetase family protein	-
ABNR97_RS08105	-	1548609..1548920 (-)	312	WP_003697631.1	exodeoxyribonuclease VII small subunit	-
ABNR97_RS08110	rsgA	1548946..1549869 (-)	924	WP_003689928.1	ribosome small subunit-dependent GTPase A	-
ABNR97_RS08115	-	1549874..1551730 (-)	1857	WP_003689927.1	ABC transporter ATP-binding protein	-
ABNR97_RS08120	-	1551756..1551893 (-)	138	WP_003689926.1	hypothetical protein	-
ABNR97_RS08125	ruvA	1551893..1552477 (-)	585	WP_003694238.1	Holliday junction branch migration protein RuvA	Machinery gene
ABNR97_RS08130	-	1552559..1552885 (-)	327	WP_003689921.1	PepSY domain-containing protein	-
ABNR97_RS08135	-	1552946..1553632 (-)	687	WP_003689919.1	septal ring lytic transglycosylase RlpA family protein	-
ABNR97_RS08140	trmL	1553760..1554224 (-)	465	WP_003689916.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
ABNR97_RS08145	-	1554289..1555014 (-)	726	WP_003696136.1	ComF family protein	-
ABNR97_RS08150	bioH	1555013..1555762 (+)	750	WP_010360850.1	pimeloyl-ACP methyl ester esterase BioH	-
ABNR97_RS08155	-	1555759..1556547 (+)	789	WP_003689910.1	class I SAM-dependent methyltransferase	-
ABNR97_RS08160	-	1556628..1556735 (-)	108	Protein_1590	IS5/IS1182 family transposase	-

Sequence

Protein

Download Length: 194 a.a. Molecular weight: 20829.12 Da Isoelectric Point: 7.2073

                                >NTDB_id=1048097 ABNR97_RS08125 WP_003694238.1 1551893..1552477(-) (ruvA) [Neisseria gonorrhoeae isolate SGC-23-001]

MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG

IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDRLFAASPAADETEDIVSTLLA

LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide

Download Length: 585 bp

                                >NTDB_id=1048097 ABNR97_RS08125 WP_003694238.1 1551893..1552477(-) (ruvA) [Neisseria gonorrhoeae isolate SGC-23-001]

ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA

AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC

GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC

ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT

CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG

CGCATACGGTAACGGACAGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG

CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT

TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(150-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	37.5	100	0.387
ruvA	Streptococcus pneumoniae R6	37.5	100	0.387
ruvA	Streptococcus pneumoniae D39	37.5	100	0.387
ruvA	Bacillus subtilis subsp. subtilis str. 168	34.951	100	0.371

Detailed information NTG1048097