Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABNR90_RS06210 Genome accession   NZ_OZ021673
Coordinates   1172364..1172948 (+) Length   194 a.a.
NCBI ID   WP_003689924.1    Uniprot ID   Q5F636
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167364..1177948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS06175 - 1168106..1168213 (+) 108 Protein_1200 IS5/IS1182 family transposase -
  ABNR90_RS06180 - 1168294..1169082 (-) 789 WP_003697625.1 class I SAM-dependent methyltransferase -
  ABNR90_RS06185 bioH 1169079..1169828 (-) 750 WP_010359261.1 pimeloyl-ACP methyl ester esterase BioH -
  ABNR90_RS06190 - 1169827..1170552 (+) 726 WP_003694234.1 ComF family protein -
  ABNR90_RS06195 trmL 1170617..1171081 (+) 465 WP_003689916.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  ABNR90_RS06200 - 1171209..1171895 (+) 687 WP_003689919.1 septal ring lytic transglycosylase RlpA family protein -
  ABNR90_RS06205 - 1171956..1172282 (+) 327 WP_003689921.1 PepSY domain-containing protein -
  ABNR90_RS06210 ruvA 1172364..1172948 (+) 585 WP_003689924.1 Holliday junction branch migration protein RuvA Machinery gene
  ABNR90_RS06215 - 1172948..1173085 (+) 138 WP_003689926.1 hypothetical protein -
  ABNR90_RS06220 - 1173111..1174967 (+) 1857 WP_003689927.1 ABC transporter ATP-binding protein -
  ABNR90_RS06225 rsgA 1174972..1175895 (+) 924 WP_003689928.1 ribosome small subunit-dependent GTPase A -
  ABNR90_RS06230 - 1175921..1176232 (+) 312 WP_003697631.1 exodeoxyribonuclease VII small subunit -
  ABNR90_RS06235 - 1176216..1177112 (+) 897 WP_003691917.1 polyprenyl synthetase family protein -
  ABNR90_RS06240 - 1177229..1177528 (-) 300 WP_010359269.1 DUF2818 family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20729.99 Da        Isoelectric Point: 6.4967

>NTDB_id=1048007 ABNR90_RS06210 WP_003689924.1 1172364..1172948(+) (ruvA) [Neisseria gonorrhoeae isolate SGC-23-002]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAASPAADETEDIVSTLLA
LGYNEREAKAAVKGVPKGTDVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1048007 ABNR90_RS06210 WP_003689924.1 1172364..1172948(+) (ruvA) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGTTATGA
AGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCAGAAGAAGATGT
CAAACGCCTCTCCTCCGCTCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCTCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAACGAACGCGAGGCAAAAGCGGCGGTCAAAGGCGTTCCGAAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCCCTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(150-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F636

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38

100

0.392
  ruvA Streptococcus pneumoniae D39

38

100

0.392
  ruvA Streptococcus pneumoniae TIGR4

37.5

100

0.387
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.951

100

0.371

Multiple sequence alignment