Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8564_RS08315 Genome accession   NZ_AP028359
Coordinates   1581015..1582196 (-) Length   393 a.a.
NCBI ID   WP_002901002.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10570     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576015..1587196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8564_RS08285 (B10570_16590) - 1576560..1576901 (+) 342 WP_002784057.1 hypothetical protein -
  R8564_RS08290 (B10570_16600) flgM 1576964..1577161 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8564_RS08295 (B10570_16610) - 1577203..1577637 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8564_RS08300 (B10570_16620) flgK 1577647..1579473 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  R8564_RS08305 (B10570_16630) - 1579490..1580254 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8564_RS08310 (B10570_16640) - 1580258..1581028 (+) 771 WP_002873601.1 TSUP family transporter -
  R8564_RS08315 (B10570_16650) ctsF 1581015..1582196 (-) 1182 WP_002901002.1 type II secretion system F family protein Machinery gene
  R8564_RS08320 (B10570_16660) ctsE 1582193..1583752 (-) 1560 WP_043011746.1 GspE/PulE family protein Machinery gene
  R8564_RS08325 (B10570_16670) ctsX 1583742..1584329 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8564_RS08330 (B10570_16680) ctsP 1584333..1584941 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8564_RS08335 (B10570_16690) ctsD 1584934..1586346 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8564_RS08340 (B10570_16700) ctsR 1586324..1586635 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45759.33 Da        Isoelectric Point: 8.8985

>NTDB_id=104763 R8564_RS08315 WP_002901002.1 1581015..1582196(-) (ctsF) [Campylobacter jejuni strain BCH-10570]
MKFYEVEFLKNNQNYTKTIKAENLNTAQARALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=104763 R8564_RS08315 WP_002901002.1 1581015..1582196(-) (ctsF) [Campylobacter jejuni strain BCH-10570]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAGAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAGAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment