Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8564_RS08340 Genome accession   NZ_AP028359
Coordinates   1586324..1586635 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10570     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581324..1591635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8564_RS08320 (B10570_16660) ctsE 1582193..1583752 (-) 1560 WP_043011746.1 GspE/PulE family protein Machinery gene
  R8564_RS08325 (B10570_16670) ctsX 1583742..1584329 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8564_RS08330 (B10570_16680) ctsP 1584333..1584941 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8564_RS08335 (B10570_16690) ctsD 1584934..1586346 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8564_RS08340 (B10570_16700) ctsR 1586324..1586635 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8564_RS08345 (B10570_16710) nifJ 1586659..1590219 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8564_RS08350 (B10570_16720) - 1590312..1590952 (-) 641 Protein_1637 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=104768 R8564_RS08340 WP_002855438.1 1586324..1586635(-) (ctsR) [Campylobacter jejuni strain BCH-10570]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104768 R8564_RS08340 WP_002855438.1 1586324..1586635(-) (ctsR) [Campylobacter jejuni strain BCH-10570]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment