Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   ACERCD_RS00330 Genome accession   NZ_CP168756
Coordinates   69533..70882 (-) Length   449 a.a.
NCBI ID   WP_070657147.1    Uniprot ID   -
Organism   Staphylococcus equorum strain SN42     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 64533..75882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACERCD_RS00295 (ACERCD_00295) - 64970..65353 (+) 384 WP_070657153.1 hypothetical protein -
  ACERCD_RS00300 (ACERCD_00300) - 65505..65726 (-) 222 Protein_57 hypothetical protein -
  ACERCD_RS00305 (ACERCD_00305) - 65741..66247 (-) 507 WP_119627602.1 DUF1643 domain-containing protein -
  ACERCD_RS00310 (ACERCD_00310) - 66261..66572 (-) 312 WP_107398351.1 DUF960 family protein -
  ACERCD_RS00315 (ACERCD_00315) - 66668..67006 (-) 339 WP_103388705.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACERCD_RS00320 (ACERCD_00320) - 67562..67849 (+) 288 WP_103266532.1 hypothetical protein -
  ACERCD_RS00325 (ACERCD_00325) ccrB 67885..69513 (-) 1629 WP_373442634.1 cassette chromosome recombinase CcrB Machinery gene
  ACERCD_RS00330 (ACERCD_00330) ccrA 69533..70882 (-) 1350 WP_070657147.1 cassette chromosome recombinase CcrA Machinery gene
  ACERCD_RS00335 (ACERCD_00335) - 71082..71720 (-) 639 Protein_64 hypothetical protein -
  ACERCD_RS00340 (ACERCD_00340) - 71729..72067 (+) 339 Protein_65 recombinase family protein -
  ACERCD_RS00345 (ACERCD_00345) - 72179..72538 (-) 360 WP_046465687.1 hypothetical protein -
  ACERCD_RS00350 (ACERCD_00350) - 72745..73071 (+) 327 WP_000391495.1 metalloregulator ArsR/SmtB family transcription factor -
  ACERCD_RS00355 (ACERCD_00355) - 73374..75299 (+) 1926 WP_070657144.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52189.11 Da        Isoelectric Point: 10.1242

>NTDB_id=1045550 ACERCD_RS00330 WP_070657147.1 69533..70882(-) (ccrA) [Staphylococcus equorum strain SN42]
MEEAIGYLRQSTLKQQSLAAQKQTIKALAKKHSIKQITFYSDKQSGRTDKRNGYQQIIELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYHYH
NGTFMINNTEAPTVKAVFSYYLQGYGYKKIAQYLEADEKFINRKPYQVRNIIMNPNYCGRVINQYGQYDNMCPSIVSTSI
YEKAQAIRSQKQLKQTSSANRLKQKIKCPFCNSTLTNMTIRKKHRTLRYYVCPQNMNASRFVCEFKGINAQSLEASVLAT
CQDFFQNQHLYSKINHTIQKRLKKQKDIEAKSTVTQEQLIEKLAQGKIDAETFREQTQSFRQQSKPITSIHTHQIQKALQ
NVMQQRFTLNMLYPYIDEIHITKNKILTGIYFKNEPLNIVNQTAQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1045550 ACERCD_RS00330 WP_070657147.1 69533..70882(-) (ccrA) [Staphylococcus equorum strain SN42]
ATGGAAGAAGCCATTGGTTACTTACGTCAAAGTACACTCAAACAACAATCTCTAGCAGCACAGAAACAGACCATCAAAGC
ACTAGCCAAAAAACACAGTATTAAACAAATCACTTTTTACAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ATCAACAAATTATTGAACTGATTCAACAAGGACAATGTGACGTATTATGCTGCTATCGTCTGAATCGACTTCATCGTAAC
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGACTAAAACTCAACATTTTCATCAGCTTGGCTGAACTAGAATCAGATAATATTGGAGAAC
AAGTCAAAAATGGCCTTCGGGAAAAAGCAAAACAAGGTAAACTGATTACGACCCATGCACCCTTTGGCTATCACTATCAT
AACGGTACTTTCATGATAAACAACACAGAGGCACCAACCGTAAAAGCTGTATTCAGTTATTATCTTCAAGGCTATGGTTA
TAAAAAAATTGCACAGTACTTAGAAGCTGACGAGAAATTCATCAATCGTAAACCCTATCAAGTACGTAATATTATCATGA
ACCCCAATTATTGTGGTCGAGTCATTAATCAATACGGACAATATGACAACATGTGTCCTTCTATTGTTTCGACAAGTATA
TATGAAAAAGCTCAAGCGATACGGTCACAGAAACAACTCAAACAGACATCGTCAGCTAATCGACTCAAACAAAAAATCAA
ATGTCCTTTTTGTAATTCAACACTTACCAATATGACAATTAGAAAAAAGCACCGTACATTACGTTATTATGTCTGTCCCC
AAAATATGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGAATCAACGCACAATCATTAGAAGCGAGTGTCTTAGCTACA
TGTCAAGACTTCTTTCAAAATCAACATCTGTATTCAAAAATCAACCATACAATCCAAAAACGACTCAAAAAACAAAAAGA
CATAGAAGCTAAAAGTACAGTCACGCAAGAACAACTGATAGAAAAATTAGCCCAAGGTAAAATTGATGCAGAAACATTCA
GAGAACAAACGCAATCATTTCGACAACAGTCAAAACCTATAACATCAATCCATACGCATCAAATTCAAAAGGCTTTACAA
AATGTCATGCAACAACGTTTCACATTAAACATGTTGTACCCTTACATTGATGAAATTCATATTACTAAAAATAAAATACT
TACGGGTATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAACAGCACAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

85.301

100

0.853
  ccrA Staphylococcus aureus N315

77.06

100

0.771

Multiple sequence alignment