Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPSS_RS02115 Genome accession   NZ_CP168716
Coordinates   404255..404764 (-) Length   169 a.a.
NCBI ID   WP_395319751.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 399255..409764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSS_RS02095 dnaB 399882..401318 (-) 1437 WP_395319743.1 replicative DNA helicase -
  ACEPSS_RS02100 rplI 401347..401799 (-) 453 WP_395319745.1 50S ribosomal protein L9 -
  ACEPSS_RS02105 - 401829..403847 (-) 2019 WP_395319747.1 DHH family phosphoesterase -
  ACEPSS_RS02110 rpsR 403960..404214 (-) 255 WP_395319749.1 30S ribosomal protein S18 -
  ACEPSS_RS02115 ssb 404255..404764 (-) 510 WP_395319751.1 single-stranded DNA-binding protein Machinery gene
  ACEPSS_RS02120 rpsF 404795..405091 (-) 297 WP_395319753.1 30S ribosomal protein S6 -
  ACEPSS_RS02125 gyrA 405289..407805 (-) 2517 WP_395319755.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18452.11 Da        Isoelectric Point: 4.7172

>NTDB_id=1045197 ACEPSS_RS02115 WP_395319751.1 404255..404764(-) (ssb) [Fructilactobacillus frigidiflavus strain FUA3702]
MINTVVLTGRLTRDVDLRYTQSGAAVGTFTLAVDRRFTSSNGDREADFVNCVIWRKPAENLANFVHKGSLIGVEGRLQTR
NYENKQGQRVYVTEVVVENFTFLEPRQNGSQPGNNNAGNAAPQQNPFGTPANNNFGGNNNQNINKGSDNSADPFAGGDQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1045197 ACEPSS_RS02115 WP_395319751.1 404255..404764(-) (ssb) [Fructilactobacillus frigidiflavus strain FUA3702]
ATGATTAATACCGTTGTCCTAACTGGACGTTTAACACGAGATGTCGATTTGCGATACACCCAAAGCGGCGCAGCTGTAGG
TACTTTTACCTTAGCTGTTGATCGTAGATTCACCAGTTCCAATGGTGATCGGGAAGCTGATTTTGTCAATTGTGTTATCT
GGCGTAAACCAGCTGAAAACCTTGCTAACTTCGTTCATAAAGGTTCGTTAATCGGGGTGGAAGGTCGTTTACAGACTAGA
AACTACGAAAACAAACAAGGCCAACGGGTCTACGTGACCGAAGTGGTCGTTGAAAACTTTACTTTCTTGGAACCACGTCA
AAATGGTAGCCAACCAGGTAATAACAACGCCGGCAATGCTGCTCCTCAACAAAATCCATTTGGCACTCCAGCTAATAATA
ATTTTGGTGGTAATAACAACCAAAATATTAACAAAGGTTCCGACAATTCTGCCGATCCATTTGCTGGTGGTGACCAAATC
GACATTTCCGATGATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.333

100

0.675
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.047

100

0.621
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

62.722

0.361

Multiple sequence alignment