Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPSR_RS08210 Genome accession   NZ_CP168714
Coordinates   1577865..1578374 (-) Length   169 a.a.
NCBI ID   WP_395319751.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1572865..1583374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSR_RS08190 dnaB 1573492..1574928 (-) 1437 WP_395319743.1 replicative DNA helicase -
  ACEPSR_RS08195 rplI 1574957..1575409 (-) 453 WP_395319745.1 50S ribosomal protein L9 -
  ACEPSR_RS08200 - 1575439..1577457 (-) 2019 WP_395319747.1 DHH family phosphoesterase -
  ACEPSR_RS08205 rpsR 1577570..1577824 (-) 255 WP_395319749.1 30S ribosomal protein S18 -
  ACEPSR_RS08210 ssb 1577865..1578374 (-) 510 WP_395319751.1 single-stranded DNA-binding protein Machinery gene
  ACEPSR_RS08215 rpsF 1578405..1578701 (-) 297 WP_395319753.1 30S ribosomal protein S6 -
  ACEPSR_RS08220 gyrA 1578899..1581415 (-) 2517 WP_395319755.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18452.11 Da        Isoelectric Point: 4.7172

>NTDB_id=1045191 ACEPSR_RS08210 WP_395319751.1 1577865..1578374(-) (ssb) [Fructilactobacillus frigidiflavus strain FUA3912]
MINTVVLTGRLTRDVDLRYTQSGAAVGTFTLAVDRRFTSSNGDREADFVNCVIWRKPAENLANFVHKGSLIGVEGRLQTR
NYENKQGQRVYVTEVVVENFTFLEPRQNGSQPGNNNAGNAAPQQNPFGTPANNNFGGNNNQNINKGSDNSADPFAGGDQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1045191 ACEPSR_RS08210 WP_395319751.1 1577865..1578374(-) (ssb) [Fructilactobacillus frigidiflavus strain FUA3912]
ATGATTAATACCGTTGTCCTAACTGGACGTTTAACACGAGATGTCGATTTGCGATACACCCAAAGCGGCGCAGCTGTAGG
TACTTTTACCTTAGCTGTTGATCGTAGATTCACCAGTTCCAATGGTGATCGGGAAGCTGATTTTGTCAATTGTGTTATCT
GGCGTAAACCAGCTGAAAACCTTGCTAACTTCGTTCATAAAGGTTCGTTAATCGGGGTGGAAGGTCGTTTACAGACTAGA
AACTACGAAAACAAACAAGGCCAACGGGTCTACGTGACCGAAGTGGTCGTTGAAAACTTTACTTTCTTGGAACCACGTCA
AAATGGTAGCCAACCAGGTAATAACAACGCCGGCAATGCTGCTCCTCAACAAAATCCATTTGGCACTCCAGCTAATAATA
ATTTTGGTGGTAATAACAACCAAAATATTAACAAAGGTTCCGACAATTCTGCCGATCCATTTGCTGGTGGTGACCAAATC
GACATTTCCGATGATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.333

100

0.675
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.047

100

0.621
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

62.722

0.361

Multiple sequence alignment