Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACEO96_RS12605 Genome accession   NZ_CP168657
Coordinates   2749996..2750628 (+) Length   210 a.a.
NCBI ID   WP_010318741.1    Uniprot ID   A0AAW8GZN2
Organism   Vibrio anguillarum strain VA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744996..2755628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS12580 (ACEO96_12580) - 2745072..2746991 (+) 1920 WP_017049199.1 ABC transporter ATP-binding protein -
  ACEO96_RS12585 (ACEO96_12585) - 2746993..2747472 (+) 480 WP_013855908.1 TIGR02444 family protein -
  ACEO96_RS12590 (ACEO96_12590) - 2747529..2748536 (+) 1008 WP_373433095.1 hydrolase -
  ACEO96_RS12595 (ACEO96_12595) - 2748596..2748802 (+) 207 WP_010318743.1 YheU family protein -
  ACEO96_RS12600 (ACEO96_12600) - 2748885..2749754 (+) 870 WP_017046747.1 phosphoribulokinase -
  ACEO96_RS12605 (ACEO96_12605) crp 2749996..2750628 (+) 633 WP_010318741.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACEO96_RS12610 (ACEO96_12610) - 2750732..2751526 (-) 795 WP_194663961.1 DUF1338 domain-containing protein -
  ACEO96_RS12615 (ACEO96_12615) astD 2751595..2753052 (-) 1458 WP_017046749.1 succinylglutamate-semialdehyde dehydrogenase -
  ACEO96_RS12620 (ACEO96_12620) astA 2753084..2754103 (-) 1020 WP_373433096.1 arginine N-succinyltransferase -
  ACEO96_RS12625 (ACEO96_12625) - 2754170..2755381 (-) 1212 WP_026027324.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23663.44 Da        Isoelectric Point: 7.8388

>NTDB_id=1044832 ACEO96_RS12605 WP_010318741.1 2749996..2750628(+) (crp) [Vibrio anguillarum strain VA1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1044832 ACEO96_RS12605 WP_010318741.1 2749996..2750628(+) (crp) [Vibrio anguillarum strain VA1]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
ACGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGTCTACAAGTCACCAGTCAAAAAGTGGGTG
ATTTAGCCTTCCTAGACGTGACGGGTCGTATTGCACAAACGCTACTCAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAAATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment