Detailed information NTG1044830

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: ACEO96_RS08880
• Genome accession: NZ_CP168657
• Coordinates: 1966236..1968479 (-)
• Length: 747 a.a.
• NCBI ID: WP_228209211.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain VA1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1961236..1973479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEO96_RS08855 (ACEO96_08855)	-	1961971..1962489 (+)	519	WP_170898579.1	cytochrome b	-
ACEO96_RS08860 (ACEO96_08860)	kdsB	1962532..1963284 (-)	753	WP_017045182.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACEO96_RS08865 (ACEO96_08865)	-	1963284..1963463 (-)	180	WP_013856535.1	Trm112 family protein	-
ACEO96_RS08870 (ACEO96_08870)	lpxK	1963444..1964451 (-)	1008	WP_170898581.1	tetraacyldisaccharide 4'-kinase	-
ACEO96_RS08875 (ACEO96_08875)	msbA	1964455..1966203 (-)	1749	WP_013856533.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
ACEO96_RS08880 (ACEO96_08880)	comEC	1966236..1968479 (-)	2244	WP_228209211.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACEO96_RS08885 (ACEO96_08885)	-	1968486..1968995 (+)	510	WP_017042300.1	DUF2062 domain-containing protein	-
ACEO96_RS08890 (ACEO96_08890)	lolE	1969134..1970378 (-)	1245	WP_013856531.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
ACEO96_RS08895 (ACEO96_08895)	lolD	1970379..1971065 (-)	687	WP_017048077.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
ACEO96_RS08900 (ACEO96_08900)	lolC	1971058..1972266 (-)	1209	WP_170898583.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
ACEO96_RS08905 (ACEO96_08905)	-	1972432..1973001 (+)	570	WP_017048079.1	hypothetical protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 83457.39 Da
• Isoelectric Point: 9.5269

>NTDB_id=1044830 ACEO96_RS08880 WP_228209211.1 1966236..1968479(-) (comEC) [Vibrio anguillarum strain VA1]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVGYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWKALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTQRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSIIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide

• Length: 2244 bp

>NTDB_id=1044830 ACEO96_RS08880 WP_228209211.1 1966236..1968479(-) (comEC) [Vibrio anguillarum strain VA1]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGGTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATTGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCACA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGAAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTCCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTTATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCGGTTGTGTTCTACCAACTTTC
TCTACCTCAAACTCAGCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTTGCTTTAGTCTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTACTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTGGCGGTTTACAGCATCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTGGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGCGGTGATCACATCCAGGCAACAGTTGCCC
CTGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
TGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACCGTAGCGCGTGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCCATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAATCCTGAGGTCGCTATTGCCTCGCTCGCCAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (208-462)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-681)

• Domain of unknown function (DUF4131) (DUF4131) (24-172)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio cholerae strain A1552	52.005	100	0.521
comEC	Vibrio campbellii strain DS40M4	43.725	100	0.443
comEC	Vibrio parahaemolyticus RIMD 2210633	43.593	100	0.442