Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8493_RS07395 Genome accession   NZ_AP028341
Coordinates   1436727..1438145 (-) Length   472 a.a.
NCBI ID   WP_203544942.1    Uniprot ID   A0A5T1YLL9
Organism   Campylobacter coli strain BCH-10328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431727..1443145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS07370 (B10328_14430) - 1432067..1432831 (+) 765 WP_317647154.1 TSUP family transporter -
  R8493_RS07375 (B10328_14440) ctsF 1432828..1434003 (-) 1176 WP_317647155.1 type II secretion system F family protein Machinery gene
  R8493_RS07380 (B10328_14450) ctsE 1433990..1435552 (-) 1563 WP_221678917.1 GspE/PulE family protein Machinery gene
  R8493_RS07385 (B10328_14460) - 1435545..1436141 (-) 597 WP_289871837.1 CDC27 family protein -
  R8493_RS07390 (B10328_14470) ctsP 1436138..1436734 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8493_RS07395 (B10328_14480) ctsD 1436727..1438145 (-) 1419 WP_203544942.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8493_RS07400 (B10328_14490) ctsR 1438123..1438434 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8493_RS07405 (B10328_14500) nifJ 1438458..1442018 (-) 3561 WP_215432058.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8493_RS07410 (B10328_14510) - 1442122..1442760 (-) 639 WP_002826026.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53446.01 Da        Isoelectric Point: 6.5151

>NTDB_id=104473 R8493_RS07395 WP_203544942.1 1436727..1438145(-) (ctsD) [Campylobacter coli strain BCH-10328]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENHDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRIIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNANIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=104473 R8493_RS07395 WP_203544942.1 1436727..1438145(-) (ctsD) [Campylobacter coli strain BCH-10328]
ATGATAAGATTAATATTTATTAAGATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCGGTAAGAGAAGGACAAAGTATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACCATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCTATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGCACTGAAAATGGTACAACAGTAAGTGAAAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGATA
ATAAAAGACAAAAAGAACCCCGCATTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGCGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCTAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATGCAAATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1YLL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.508

100

0.805

Multiple sequence alignment