Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8493_RS07400 Genome accession   NZ_AP028341
Coordinates   1438123..1438434 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain BCH-10328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433123..1443434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS07380 (B10328_14450) ctsE 1433990..1435552 (-) 1563 WP_221678917.1 GspE/PulE family protein Machinery gene
  R8493_RS07385 (B10328_14460) - 1435545..1436141 (-) 597 WP_289871837.1 CDC27 family protein -
  R8493_RS07390 (B10328_14470) ctsP 1436138..1436734 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8493_RS07395 (B10328_14480) ctsD 1436727..1438145 (-) 1419 WP_203544942.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8493_RS07400 (B10328_14490) ctsR 1438123..1438434 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8493_RS07405 (B10328_14500) nifJ 1438458..1442018 (-) 3561 WP_215432058.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8493_RS07410 (B10328_14510) - 1442122..1442760 (-) 639 WP_002826026.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=104474 R8493_RS07400 WP_002779316.1 1438123..1438434(-) (ctsR) [Campylobacter coli strain BCH-10328]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104474 R8493_RS07400 WP_002779316.1 1438123..1438434(-) (ctsR) [Campylobacter coli strain BCH-10328]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment