Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | R8493_RS07375 | Genome accession | NZ_AP028341 |
| Coordinates | 1432828..1434003 (-) | Length | 391 a.a. |
| NCBI ID | WP_317647155.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain BCH-10328 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1427828..1439003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8493_RS07345 (B10328_14380) | - | 1428368..1428709 (+) | 342 | WP_002845139.1 | hypothetical protein | - |
| R8493_RS07350 (B10328_14390) | flgM | 1428772..1428969 (+) | 198 | WP_002845138.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| R8493_RS07355 (B10328_14400) | - | 1429012..1429446 (+) | 435 | WP_002845628.1 | flagellar protein FlgN | - |
| R8493_RS07360 (B10328_14410) | flgK | 1429456..1431282 (+) | 1827 | WP_289871835.1 | flagellar hook-associated protein FlgK | - |
| R8493_RS07365 (B10328_14420) | - | 1431299..1432063 (+) | 765 | WP_002845135.1 | TIGR02757 family protein | - |
| R8493_RS07370 (B10328_14430) | - | 1432067..1432831 (+) | 765 | WP_317647154.1 | TSUP family transporter | - |
| R8493_RS07375 (B10328_14440) | ctsF | 1432828..1434003 (-) | 1176 | WP_317647155.1 | type II secretion system F family protein | Machinery gene |
| R8493_RS07380 (B10328_14450) | ctsE | 1433990..1435552 (-) | 1563 | WP_221678917.1 | GspE/PulE family protein | Machinery gene |
| R8493_RS07385 (B10328_14460) | - | 1435545..1436141 (-) | 597 | WP_289871837.1 | CDC27 family protein | - |
| R8493_RS07390 (B10328_14470) | ctsP | 1436138..1436734 (-) | 597 | WP_002779314.1 | ATP-binding protein | Machinery gene |
| R8493_RS07395 (B10328_14480) | ctsD | 1436727..1438145 (-) | 1419 | WP_203544942.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| R8493_RS07400 (B10328_14490) | ctsR | 1438123..1438434 (-) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 45552.37 Da Isoelectric Point: 9.4461
>NTDB_id=104470 R8493_RS07375 WP_317647155.1 1432828..1434003(-) (ctsF) [Campylobacter coli strain BCH-10328]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFFSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFFSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
Nucleotide
Download Length: 1176 bp
>NTDB_id=104470 R8493_RS07375 WP_317647155.1 1432828..1434003(-) (ctsF) [Campylobacter coli strain BCH-10328]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTCAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTATATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTATCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGTGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCTTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGTGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTCAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTATATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTATCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGTGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCTTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGTGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
60.406 |
100 |
0.609 |