Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OWO33_RS11180 Genome accession   NZ_OX461090
Coordinates   2194102..2194692 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae isolate MRI Z2-336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189102..2199692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OWO33_RS11145 - 2189123..2189440 (-) 318 WP_000940931.1 DUF1292 domain-containing protein -
  OWO33_RS11150 ruvX 2189466..2189885 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  OWO33_RS11155 - 2189885..2190151 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  OWO33_RS11160 spx 2190353..2190751 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  OWO33_RS11165 recA 2190967..2192106 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  OWO33_RS11170 cinA 2192180..2193439 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  OWO33_RS11175 - 2193528..2194079 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  OWO33_RS11180 ruvA 2194102..2194692 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  OWO33_RS11185 - 2194694..2195926 (-) 1233 WP_000657472.1 MFS transporter -
  OWO33_RS11190 hexB 2195958..2197931 (-) 1974 WP_000034614.1 DNA mismatch repair endonuclease MutL Machinery gene
  OWO33_RS11195 - 2198157..2198360 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=1044576 OWO33_RS11180 WP_000272490.1 2194102..2194692(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-336]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1044576 OWO33_RS11180 WP_000272490.1 2194102..2194692(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-336]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACAGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408