Detailed information NTG1044548

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEOAC_RS23655
• Genome accession: NZ_CP168558
• Coordinates: 5192802..5193665 (+)
• Length: 287 a.a.
• NCBI ID: WP_413628613.1
• Uniprot ID: -
• Organism: Herbaspirillum frisingense strain CT11-119
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5187802..5198665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEOAC_RS23635 (ACEOAC_23635)	-	5187829..5188785 (+)	957	WP_413628610.1	2-hydroxyacid dehydrogenase	-
ACEOAC_RS23640 (ACEOAC_23640)	-	5188943..5190235 (+)	1293	WP_077235793.1	HlyC/CorC family transporter	-
ACEOAC_RS23645 (ACEOAC_23645)	pilF	5190357..5191493 (+)	1137	WP_413628611.1	GspE/PulE family protein	Machinery gene
ACEOAC_RS23650 (ACEOAC_23650)	-	5191480..5192721 (+)	1242	WP_413628612.1	type II secretion system F family protein	-
ACEOAC_RS23655 (ACEOAC_23655)	pilD	5192802..5193665 (+)	864	WP_413628613.1	prepilin peptidase	Machinery gene
ACEOAC_RS23660 (ACEOAC_23660)	coaE	5193675..5194295 (+)	621	WP_413445379.1	dephospho-CoA kinase	-
ACEOAC_RS23665 (ACEOAC_23665)	zapD	5194487..5195242 (+)	756	WP_006713184.1	cell division protein ZapD	-
ACEOAC_RS23670 (ACEOAC_23670)	yacG	5195272..5195457 (+)	186	WP_413445378.1	DNA gyrase inhibitor YacG	-
ACEOAC_RS23675 (ACEOAC_23675)	mutT	5195545..5195958 (-)	414	WP_241812504.1	8-oxo-dGTP diphosphatase MutT	-
ACEOAC_RS23680 (ACEOAC_23680)	-	5195958..5196833 (-)	876	WP_413445377.1	ATP-binding protein	-
ACEOAC_RS23685 (ACEOAC_23685)	argJ	5197023..5198258 (-)	1236	WP_006713178.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31070.31 Da
• Isoelectric Point: 8.0059

>NTDB_id=1044548 ACEOAC_RS23655 WP_413628613.1 5192802..5193665(+) (pilD) [Herbaspirillum frisingense strain CT11-119]
MHFLEAYALPGNPALAGLAALLGLLVGSFLNVVIHRLPIMMLRETANFVAMERGEALPHQDRYDLWLPHSACPHCARPLA
PWHKLPVLSWLLLRGRCSFCQARISARYPLVELLTALLFALVAWRFGLGATGLAVMLCSAFLIALAFIDADTMLLPDDLT
LPLLWLGLLVNLNHRLVALPDAVLGAAAGYGVLWLIFWIFKLVTGKDGLGYGDFKLMAALGAWLGWQALPLVLLLASVMG
ALLGLALMVGGRHQRGQAIPFGPCLAGAGLLALLLDGTWLNLTHFAY

Nucleotide

• Length: 864 bp

>NTDB_id=1044548 ACEOAC_RS23655 WP_413628613.1 5192802..5193665(+) (pilD) [Herbaspirillum frisingense strain CT11-119]
ATGCATTTCCTGGAAGCCTACGCCCTCCCCGGCAATCCCGCCCTGGCCGGCCTGGCGGCCCTGCTGGGCCTGCTGGTGGG
TAGCTTCCTGAACGTAGTGATCCACCGCCTGCCCATCATGATGCTGCGCGAGACCGCCAATTTTGTGGCGATGGAGCGCG
GCGAGGCCCTGCCGCATCAGGATCGCTACGACCTCTGGCTGCCCCATTCCGCCTGCCCGCACTGCGCCCGGCCGCTGGCG
CCGTGGCACAAGCTGCCGGTGCTGAGCTGGCTACTGCTGCGCGGCCGCTGCAGTTTTTGCCAGGCCAGGATCAGCGCGCG
CTATCCGCTGGTGGAGCTGCTGACCGCGCTCCTGTTCGCCCTGGTGGCCTGGCGCTTCGGACTGGGCGCCACCGGGCTGG
CCGTCATGCTCTGCAGCGCCTTCCTGATTGCGCTCGCCTTCATCGATGCCGACACCATGCTGCTGCCCGATGACCTGACC
CTGCCGCTGCTATGGCTGGGGCTGCTGGTGAACCTGAACCATCGCCTGGTGGCGCTGCCCGATGCAGTGCTGGGCGCGGC
CGCCGGCTATGGCGTGCTGTGGCTGATCTTCTGGATCTTCAAGCTGGTCACCGGCAAGGATGGCCTGGGCTATGGCGACT
TCAAGCTCATGGCCGCCCTGGGCGCCTGGCTGGGTTGGCAGGCGCTGCCGCTGGTGCTGCTGCTGGCCTCGGTGATGGGC
GCCCTGCTGGGCCTGGCGCTGATGGTCGGCGGGCGCCACCAGCGCGGCCAGGCCATTCCATTCGGCCCCTGCCTGGCCGG
CGCCGGCCTGCTGGCCCTGCTGCTGGATGGCACCTGGCTGAACCTGACTCACTTCGCTTACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55	90.592	0.498
pilD	Neisseria gonorrhoeae MS11	50.385	90.592	0.456
pilD	Vibrio campbellii strain DS40M4	48.699	93.728	0.456
pilD	Acinetobacter baumannii D1279779	43.478	96.167	0.418
pilD	Acinetobacter nosocomialis M2	43.478	96.167	0.418