Detailed information NTG1044470

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEN8Q_RS27415
• Genome accession: NZ_CP168522
• Coordinates: 6025471..6026343 (-)
• Length: 290 a.a.
• NCBI ID: WP_413426325.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Pseusp16 strain CT11-16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6020471..6031343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEN8Q_RS27385 (ACEN8Q_27380)	-	6021226..6022494 (+)	1269	WP_413703998.1	OprD family porin	-
ACEN8Q_RS27390 (ACEN8Q_27385)	-	6022504..6022746 (-)	243	WP_413426335.1	DUF2790 domain-containing protein	-
ACEN8Q_RS27395 (ACEN8Q_27390)	-	6022868..6023800 (+)	933	WP_413703999.1	LysR family transcriptional regulator	-
ACEN8Q_RS27400 (ACEN8Q_27395)	-	6023929..6024618 (+)	690	WP_413704000.1	energy-coupling factor ABC transporter permease	-
ACEN8Q_RS27405 (ACEN8Q_27400)	yacG	6024654..6024854 (-)	201	WP_413426329.1	DNA gyrase inhibitor YacG	-
ACEN8Q_RS27410 (ACEN8Q_27405)	coaE	6024851..6025474 (-)	624	WP_413426327.1	dephospho-CoA kinase	-
ACEN8Q_RS27415 (ACEN8Q_27410)	pilD	6025471..6026343 (-)	873	WP_413426325.1	prepilin peptidase	Machinery gene
ACEN8Q_RS27420 (ACEN8Q_27415)	pilC	6026345..6027562 (-)	1218	WP_413426323.1	type II secretion system F family protein	Machinery gene
ACEN8Q_RS27425 (ACEN8Q_27420)	-	6027790..6028203 (+)	414	WP_413704001.1	pilin	-
ACEN8Q_RS27430 (ACEN8Q_27425)	-	6028504..6028860 (+)	357	WP_413426319.1	BON domain-containing protein	-
ACEN8Q_RS27435 (ACEN8Q_27430)	-	6029040..6029336 (-)	297	WP_413426317.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32146.54 Da
• Isoelectric Point: 7.9924

>NTDB_id=1044470 ACEN8Q_RS27415 WP_413426325.1 6025471..6026343(-) (pilD) [Pseudomonas sp. Pseusp16 strain CT11-16]
MPLNEILIHYPLAFVLLAGITGLLVGSFLNVVIWRLPKMLEREWRVQAHDILGLPGETPVPTYNLLLPHSQCPHCGHRIR
AWENIPLLSYVLLRGRCSACAAAISPRYPLIELACGALSAFVAWHFGFGWPACLMLILSWGLLAMSLIDAEHQILPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAIAGYSVLWAVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGMMLLRWRNAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1044470 ACEN8Q_RS27415 WP_413426325.1 6025471..6026343(-) (pilD) [Pseudomonas sp. Pseusp16 strain CT11-16]
ATGCCCTTGAATGAAATCCTGATTCACTATCCGCTGGCCTTTGTCCTTCTCGCGGGAATCACCGGCCTGCTGGTCGGCAG
TTTCCTGAATGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGAGTGGCGTGTGCAGGCCCATGACATTCTCGGGC
TGCCCGGCGAAACGCCGGTGCCGACCTACAACCTGCTGCTGCCCCATTCCCAGTGCCCGCATTGCGGTCACCGGATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGTTATGTGTTGTTGCGCGGGCGCTGTTCAGCCTGCGCAGCAGCGATCAGCCCGCG
CTATCCGTTGATCGAACTGGCCTGTGGTGCGCTGTCGGCGTTTGTGGCCTGGCATTTCGGCTTCGGTTGGCCAGCCTGCC
TGATGCTGATCCTGAGTTGGGGGTTACTGGCGATGAGCCTGATCGACGCCGAACATCAGATATTGCCGGACGTACTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGTCGTTACACGAGGCGCTTTGGGGTGCAAT
AGCCGGCTACAGCGTGCTGTGGGCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGACGGCATGGGCTACGGTGATT
TCAAGCTGCTGGCGATGCTGGGAGCCTGGGGTGGCTGGCAGATTTTGCCACTGACTATCCTGCTGTCCTCGCTGGTGGGT
GCCATTATCGGGATGATGCTGCTGCGCTGGCGCAATGCAAAAACCTCGACGCCGATCCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACCTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.241	0.521
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Neisseria gonorrhoeae MS11	50.741	93.103	0.472
pilD	Acinetobacter baumannii D1279779	48.175	94.483	0.455
pilD	Acinetobacter nosocomialis M2	48.175	94.483	0.455