Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8628_RS07605 Genome accession   NZ_AP028335
Coordinates   1466418..1467599 (-) Length   393 a.a.
NCBI ID   WP_317653370.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10174     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1461418..1472599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS07575 (B10174_15000) - 1461962..1462303 (+) 342 WP_002869194.1 hypothetical protein -
  R8628_RS07580 (B10174_15010) flgM 1462366..1462563 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8628_RS07585 (B10174_15020) - 1462606..1463040 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8628_RS07590 (B10174_15030) flgK 1463050..1464876 (+) 1827 WP_317653368.1 flagellar hook-associated protein FlgK -
  R8628_RS07595 (B10174_15040) - 1464893..1465657 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8628_RS07600 (B10174_15050) - 1465661..1466425 (+) 765 WP_002860344.1 TSUP family transporter -
  R8628_RS07605 (B10174_15060) ctsF 1466418..1467599 (-) 1182 WP_317653370.1 type II secretion system F family protein Machinery gene
  R8628_RS07610 (B10174_15070) ctsE 1467596..1469155 (-) 1560 WP_070299446.1 GspE/PulE family protein Machinery gene
  R8628_RS07615 (B10174_15080) ctsX 1469145..1469732 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8628_RS07620 (B10174_15090) ctsP 1469736..1470344 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8628_RS07625 (B10174_15100) ctsD 1470337..1471749 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8628_RS07630 (B10174_15110) ctsR 1471727..1472038 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45763.37 Da        Isoelectric Point: 9.2580

>NTDB_id=104369 R8628_RS07605 WP_317653370.1 1466418..1467599(-) (ctsF) [Campylobacter jejuni strain BCH-10174]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFFKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=104369 R8628_RS07605 WP_317653370.1 1466418..1467599(-) (ctsF) [Campylobacter jejuni strain BCH-10174]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTCAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment