Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8628_RS07630 Genome accession   NZ_AP028335
Coordinates   1471727..1472038 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10174     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466727..1477038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS07610 (B10174_15070) ctsE 1467596..1469155 (-) 1560 WP_070299446.1 GspE/PulE family protein Machinery gene
  R8628_RS07615 (B10174_15080) ctsX 1469145..1469732 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8628_RS07620 (B10174_15090) ctsP 1469736..1470344 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8628_RS07625 (B10174_15100) ctsD 1470337..1471749 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8628_RS07630 (B10174_15110) ctsR 1471727..1472038 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8628_RS07635 (B10174_15120) nifJ 1472062..1475622 (-) 3561 WP_317653371.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8628_RS07640 (B10174_15130) - 1475716..1476357 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=104374 R8628_RS07630 WP_002855438.1 1471727..1472038(-) (ctsR) [Campylobacter jejuni strain BCH-10174]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104374 R8628_RS07630 WP_002855438.1 1471727..1472038(-) (ctsR) [Campylobacter jejuni strain BCH-10174]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment