Detailed information NTG1043565

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNX08_RS18775
• Genome accession: NZ_CP168265
• Coordinates: 4019450..4020349 (+)
• Length: 299 a.a.
• NCBI ID: WP_022536665.1
• Uniprot ID: -
• Organism: Cupriavidus sp. DF5525 strain 73-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4014450..4025349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNX08_RS18750 (ABNX08_018750)	ispB	4014770..4015699 (+)	930	WP_051369817.1	octaprenyl diphosphate synthase	-
ABNX08_RS18760 (ABNX08_018760)	-	4016034..4016174 (-)	141	WP_374063626.1	hypothetical protein	-
ABNX08_RS18765 (ABNX08_018765)	pilB	4016381..4018105 (+)	1725	WP_349607170.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNX08_RS18770 (ABNX08_018770)	-	4018175..4019446 (+)	1272	WP_022536664.1	type II secretion system F family protein	-
ABNX08_RS18775 (ABNX08_018775)	pilD	4019450..4020349 (+)	900	WP_022536665.1	A24 family peptidase	Machinery gene
ABNX08_RS18780 (ABNX08_018780)	coaE	4020436..4021074 (+)	639	WP_022536666.1	dephospho-CoA kinase	-
ABNX08_RS18785 (ABNX08_018785)	zapD	4021322..4022080 (+)	759	WP_022536667.1	cell division protein ZapD	-
ABNX08_RS18790 (ABNX08_018790)	-	4022111..4022302 (+)	192	WP_022536668.1	DNA gyrase inhibitor YacG	-
ABNX08_RS18795 (ABNX08_018795)	-	4022481..4022843 (-)	363	WP_022536669.1	OPT/YSL family transporter	-
ABNX08_RS18800 (ABNX08_018800)	-	4022901..4023347 (-)	447	WP_022536670.1	NUDIX domain-containing protein	-
ABNX08_RS18805 (ABNX08_018805)	-	4023344..4024249 (-)	906	WP_022536671.1	ATP-binding protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32040.31 Da
• Isoelectric Point: 8.3474

>NTDB_id=1043565 ABNX08_RS18775 WP_022536665.1 4019450..4020349(+) (pilD) [Cupriavidus sp. DF5525 strain 73-1]
MALAFSTSPFPTGSGQLLHALAALPPAFMVAVAALLGLVVGSFLNVVIHRLPRMMERDEANYIAELRGDPLPYPARYNLM
VPRSACPHCGHAIAPWENVPVLSWLLLRGRCSACKTPISVRYPLVELACGLLSALLAWRFGPGWQTLAALVLVWSLLALT
MIDADTQLLPDQITLPLLWLGLLLNLGGLFVPLADAVIGAAAGYLVLWVAYWLFRLVRGKEGMGFGDFKLMAALGAWFGW
QALPALVLLSSVAGVVFGLASIALRRQERDTPFPFGPFIALAGVVVLGFGPGVLPLALP

Nucleotide

• Length: 900 bp

>NTDB_id=1043565 ABNX08_RS18775 WP_022536665.1 4019450..4020349(+) (pilD) [Cupriavidus sp. DF5525 strain 73-1]
ATGGCTTTGGCATTCTCCACCTCGCCTTTCCCGACCGGCAGCGGGCAGCTGCTGCACGCGCTGGCGGCGCTGCCGCCGGC
CTTCATGGTCGCGGTGGCGGCCCTGCTGGGGCTGGTGGTCGGCAGCTTCCTCAACGTGGTCATCCACCGGCTGCCGCGCA
TGATGGAGCGCGACGAGGCCAACTATATCGCCGAACTGCGCGGCGACCCGCTGCCCTATCCCGCCCGCTACAACCTGATG
GTGCCGCGCTCGGCCTGCCCGCATTGCGGGCACGCGATCGCGCCGTGGGAAAACGTGCCGGTGCTGAGCTGGTTGCTGCT
GCGCGGGCGCTGCTCGGCCTGCAAGACGCCGATCAGCGTGCGCTATCCGCTGGTGGAGCTGGCCTGCGGCCTGCTGAGCG
CGCTGCTGGCGTGGCGCTTCGGGCCGGGCTGGCAGACGTTGGCCGCGCTGGTGCTGGTGTGGTCGCTGCTGGCGCTGACC
ATGATCGATGCCGACACGCAGCTGCTGCCCGACCAGATCACGCTGCCGCTGCTGTGGCTGGGCCTGCTGCTGAACCTGGG
TGGCCTGTTCGTGCCGCTGGCCGATGCGGTGATCGGCGCCGCCGCCGGCTACCTGGTGCTGTGGGTGGCGTACTGGCTGT
TCCGGCTGGTGCGCGGCAAGGAAGGCATGGGCTTCGGCGACTTCAAGCTGATGGCCGCGCTGGGCGCGTGGTTCGGCTGG
CAGGCGCTGCCGGCGCTGGTGCTGTTGTCGTCGGTCGCGGGCGTGGTGTTCGGGCTGGCCAGCATCGCGCTGCGCCGGCA
GGAGCGTGATACACCCTTCCCCTTTGGCCCTTTCATCGCGCTGGCGGGCGTGGTGGTGCTGGGGTTCGGCCCGGGCGTGC
TGCCGCTGGCGCTGCCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (35-140)

• Type IV leader peptidase family (Peptidase_A24) (150-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.97	89.632	0.502
pilD	Vibrio campbellii strain DS40M4	52.19	91.639	0.478
pilD	Neisseria gonorrhoeae MS11	50.735	90.97	0.462
pilD	Acinetobacter baumannii D1279779	47.81	91.639	0.438
pilD	Acinetobacter nosocomialis M2	47.445	91.639	0.435