Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABNX08_RS05600 Genome accession   NZ_CP168265
Coordinates   1166698..1169076 (+) Length   792 a.a.
NCBI ID   WP_349609415.1    Uniprot ID   -
Organism   Cupriavidus sp. DF5525 strain 73-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1161698..1174076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX08_RS05580 (ABNX08_005580) - 1162346..1163455 (-) 1110 WP_022534179.1 hypothetical protein -
  ABNX08_RS05585 (ABNX08_005585) - 1163605..1164855 (+) 1251 WP_022534180.1 lipoprotein-releasing ABC transporter permease subunit -
  ABNX08_RS05590 (ABNX08_005590) lolD 1164848..1165588 (+) 741 WP_022534181.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABNX08_RS05595 (ABNX08_005595) - 1165601..1166434 (+) 834 WP_022534182.1 TatD family hydrolase -
  ABNX08_RS05600 (ABNX08_005600) comA 1166698..1169076 (+) 2379 WP_349609415.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNX08_RS05605 (ABNX08_005605) - 1169081..1170070 (-) 990 WP_022534184.1 MurR/RpiR family transcriptional regulator -
  ABNX08_RS05610 (ABNX08_005610) edd 1170326..1172233 (+) 1908 WP_022534185.1 phosphogluconate dehydratase -
  ABNX08_RS05615 (ABNX08_005615) - 1172381..1172887 (+) 507 WP_041680974.1 gluconokinase -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 84017.03 Da        Isoelectric Point: 11.5141

>NTDB_id=1043554 ABNX08_RS05600 WP_349609415.1 1166698..1169076(+) (comA) [Cupriavidus sp. DF5525 strain 73-1]
MLDTAAAGKLPAPHALRATALVLALLAIGMIMRGWRLHPALRSLALASLAFAAAFSWTAWRADLRMRDWLPATLESRDLD
VRGVVSGLPAGTAAGTRFAFTVEHAGANVQLPTRLIVNWRGAPPDLRPGQRFTLTVRLRRPRGLANPFGFDYAYWLLALG
YGATGYVRRAQGPPQDATGERLAWRIEAQRAAMRDHLRAALPPDARFGAVLVALVIGDQRGIEADDWPLFRRTGISHLVA
ISGLHITMIAGMVASAAALLWRHSFGLGRWLRRPLPLWLPARQAALVAAVASALTYGLLAGMQIPALRTVAMLCVAAIAV
WGARAPPASVVLAWAALVALLLDPWAVMSPGFWLSFGAVAVIFFAARPGRDAVQDGRWQRLRATLAAAAHTQWAVTIGLV
PLTLLLFRQVSVVSPFANAVAIPVVSLLVTPLSLLAAALPLALAVPVLVVAHQAMVWLAAALAWLSALQWAMWEAASAGP
VLLLAAMGVALLVAPAATARVRLHGGLLMLPMVLARGPPVPHGEFRAVVLDVGQGTAVLVQTRSHALLYDAGPGYASGSS
AGAQVVVPLLRGAGIGRLDHLMVSHEDADHAGGVADVSAAVAVVARSTGAPAGHALLGPEREDCGPCAAGQQWAWDGVRF
AVLHPLAGHAQRAVVASNARSCVLRVDTARHSLLLTGDIGLAEERALIEREPGAALRADVLVVAHHGSGTSSGAAWLDAV
RPHAAVFQLGYANRYRHPQADVWERYGRAGILRYRTDETGAVTMTTSPAGYVLSIFRQAEPRYWRARPLAPR

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=1043554 ABNX08_RS05600 WP_349609415.1 1166698..1169076(+) (comA) [Cupriavidus sp. DF5525 strain 73-1]
ATGCTGGACACTGCAGCAGCAGGCAAGCTGCCGGCGCCGCATGCCTTGCGCGCGACCGCACTCGTGCTAGCACTGCTCGC
TATCGGCATGATCATGCGTGGCTGGCGGCTGCATCCCGCACTTCGCAGCCTGGCGCTCGCCAGCCTGGCATTCGCCGCCG
CGTTCAGTTGGACCGCCTGGCGCGCTGACCTGCGCATGCGCGACTGGCTGCCCGCGACGCTGGAATCGCGCGATCTCGAC
GTGCGCGGCGTGGTGTCTGGCCTGCCGGCGGGGACCGCTGCCGGGACCCGCTTTGCCTTCACCGTCGAGCATGCCGGAGC
AAACGTGCAATTGCCCACCCGCCTGATCGTCAACTGGCGCGGCGCGCCGCCCGACCTGCGCCCGGGGCAACGCTTCACGC
TGACCGTACGCCTGCGGCGTCCGCGCGGGCTCGCTAATCCCTTTGGCTTCGACTACGCCTACTGGCTGCTGGCGCTGGGC
TATGGCGCCACCGGCTATGTGCGCCGCGCGCAAGGGCCGCCGCAGGATGCGACCGGCGAACGCCTCGCATGGCGCATCGA
AGCCCAACGCGCCGCCATGCGCGACCACCTGCGCGCGGCACTGCCACCCGATGCCCGCTTCGGCGCCGTGCTAGTCGCGC
TGGTGATCGGCGACCAGCGCGGCATCGAGGCCGACGACTGGCCGCTGTTCCGGCGCACGGGCATCAGCCACCTGGTCGCC
ATCTCGGGGCTGCATATCACCATGATTGCCGGCATGGTGGCGTCGGCGGCGGCGCTGTTGTGGCGGCACTCGTTCGGTCT
CGGCCGCTGGCTGCGCCGGCCGTTGCCGCTGTGGCTGCCGGCCCGTCAGGCGGCGCTGGTGGCTGCGGTGGCCAGTGCGC
TGACTTATGGGCTGCTGGCCGGCATGCAGATTCCGGCGCTGCGAACTGTGGCGATGCTGTGCGTGGCGGCGATTGCGGTC
TGGGGCGCACGCGCGCCGCCGGCATCGGTGGTGCTGGCCTGGGCGGCGCTGGTGGCGTTGCTGCTGGATCCGTGGGCGGT
GATGTCGCCGGGCTTCTGGCTGTCCTTTGGTGCGGTGGCGGTGATCTTCTTCGCCGCGCGGCCCGGGCGCGATGCCGTGC
AGGATGGACGTTGGCAACGCTTGCGGGCGACGCTGGCCGCCGCGGCGCACACCCAATGGGCCGTGACCATCGGGCTGGTG
CCGCTGACGCTGCTGCTGTTCCGGCAGGTGTCGGTGGTATCCCCGTTCGCCAATGCGGTGGCGATCCCGGTCGTGAGCCT
GCTGGTGACGCCACTGTCCCTGCTGGCGGCGGCCTTGCCGCTGGCGCTTGCCGTGCCCGTGCTGGTGGTCGCGCACCAGG
CAATGGTGTGGCTGGCTGCGGCGCTGGCGTGGCTGTCCGCCTTGCAGTGGGCGATGTGGGAGGCGGCCAGCGCCGGACCT
GTGCTGCTGCTGGCGGCGATGGGCGTGGCACTGCTGGTTGCGCCGGCCGCGACGGCTCGGGTGCGCCTGCACGGCGGCCT
GCTGATGTTGCCGATGGTGCTGGCACGCGGCCCGCCGGTGCCGCATGGCGAGTTTCGGGCGGTGGTGCTGGACGTGGGGC
AGGGCACCGCCGTGCTGGTGCAGACGCGCTCGCATGCGCTGCTGTACGACGCCGGACCCGGCTATGCATCGGGATCGAGT
GCCGGGGCGCAGGTGGTCGTGCCGCTGTTGCGCGGCGCGGGCATTGGGCGGCTCGATCACCTGATGGTCAGCCATGAGGA
TGCCGACCATGCTGGCGGTGTGGCGGACGTGTCCGCTGCGGTGGCGGTGGTCGCGCGCAGCACCGGGGCGCCGGCAGGGC
ACGCGCTGCTCGGGCCAGAGCGCGAGGACTGTGGGCCGTGTGCGGCAGGCCAGCAATGGGCGTGGGACGGCGTGCGCTTC
GCGGTGCTGCATCCGCTTGCCGGGCATGCTCAGCGTGCCGTGGTCGCCAGCAATGCGCGCAGCTGTGTGCTGCGCGTGGA
CACGGCGCGGCACAGCCTGCTGCTGACCGGCGATATCGGACTGGCGGAAGAGCGCGCGTTGATCGAGCGCGAGCCTGGCG
CCGCGTTGCGAGCCGACGTGCTGGTGGTAGCGCACCATGGCAGCGGCACGTCCTCCGGTGCGGCCTGGCTGGACGCGGTG
CGACCGCACGCGGCGGTGTTCCAGCTCGGCTATGCCAACCGCTATCGCCACCCGCAGGCAGACGTGTGGGAGCGCTACGG
CCGCGCCGGCATCCTGCGCTATCGCACCGACGAAACCGGGGCGGTGACCATGACGACGTCGCCGGCGGGCTATGTGCTGT
CCATATTTCGGCAGGCTGAGCCACGCTACTGGCGGGCGCGGCCGCTGGCGCCGCGCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-170)

Metallo-beta-lactamase superfamily (Lactamase_B)

(531-726)

Competence protein (Competence)

(214-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.731

99.495

0.485
  comA Pseudomonas stutzeri DSM 10701

36.869

100

0.369

Multiple sequence alignment