Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QOR45_RS10255 Genome accession   NZ_OX460935
Coordinates   2049109..2049699 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae isolate MRI Z2-286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044109..2054699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR45_RS10220 - 2044130..2044447 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  QOR45_RS10225 ruvX 2044473..2044892 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  QOR45_RS10230 - 2044892..2045158 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  QOR45_RS10235 spx 2045360..2045758 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  QOR45_RS10240 recA 2045974..2047113 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  QOR45_RS10245 cinA 2047187..2048446 (-) 1260 WP_001200981.1 competence/damage-inducible protein A Machinery gene
  QOR45_RS10250 - 2048535..2049086 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  QOR45_RS10255 ruvA 2049109..2049699 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  QOR45_RS10260 - 2049701..2050933 (-) 1233 WP_283572282.1 MFS transporter -
  QOR45_RS10265 hexB 2050965..2052938 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  QOR45_RS10270 - 2053164..2053367 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=1043389 QOR45_RS10255 WP_000272490.1 2049109..2049699(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-286]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1043389 QOR45_RS10255 WP_000272490.1 2049109..2049699(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-286]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAACAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408