Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACEN3H_RS17215 Genome accession   NZ_CP168231
Coordinates   3686381..3687793 (+) Length   470 a.a.
NCBI ID   WP_373358164.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3681381..3692793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS17195 (ACEN3H_17195) thrC 3681633..3682772 (+) 1140 WP_002048893.1 threonine synthase -
  ACEN3H_RS17200 (ACEN3H_17200) pbpG 3682883..3683929 (-) 1047 WP_155859233.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACEN3H_RS17205 (ACEN3H_17205) - 3684142..3684777 (+) 636 WP_002121174.1 response regulator -
  ACEN3H_RS17210 (ACEN3H_17210) pilS 3684788..3686356 (+) 1569 WP_373358163.1 PAS domain-containing sensor histidine kinase Regulator
  ACEN3H_RS17215 (ACEN3H_17215) pilR 3686381..3687793 (+) 1413 WP_373358164.1 sigma-54-dependent transcriptional regulator Regulator
  ACEN3H_RS17220 (ACEN3H_17220) - 3687797..3688981 (-) 1185 WP_151748533.1 S41 family peptidase -
  ACEN3H_RS17225 (ACEN3H_17225) gpmI 3688997..3690544 (-) 1548 WP_373358165.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACEN3H_RS17230 (ACEN3H_17230) lptG 3690671..3691741 (-) 1071 WP_016144101.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52738.88 Da        Isoelectric Point: 6.4520

>NTDB_id=1043337 ACEN3H_RS17215 WP_373358164.1 3686381..3687793(+) (pilR) [Acinetobacter lactucae strain 2024CK-01095]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSEDECIDLTHLAPPLRASSVSPQIVTKQLN
QTPNIQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=1043337 ACEN3H_RS17215 WP_373358164.1 3686381..3687793(+) (pilR) [Acinetobacter lactucae strain 2024CK-01095]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCCCACACCCCCATT
GCAGTTTTAACTGCATACGGAAATATGGACATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
CATTAATCAAATTCATTTAGATCAGTTGTTAAAAAAAGCGCTTAACCAGCCAAAACCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCGCCACCTATACAAAACTTACGGACAGCTATAAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCGAATCTGATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAACTCATGGAAAGTGAACTTTTTGGGCATAAAA
AAGGGAGCTTTACTGGTGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAATATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGCGGTGGAGATATTTTGCTA
TTGGCCAACCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGTGCTGAAACTTA
TTTATTACAGCAAGACTTTCCGGGTAATGTGCGTGAATTAAGAAATATGATTGAACGAGCTATTACTCTAAGTGAGGATG
AATGTATTGATTTAACACATTTAGCACCTCCCCTGAGAGCTAGTAGTGTGAGCCCGCAAATCGTAACGAAACAATTAAAT
CAAACACCAAATATTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCATTAAATATGACGCATTGGAATCGCACTTTGGCAGCTAAAAAGCTGGGAATGACATTCCGTTCTTTGC
GCTATCGACTCAAAAAATTTGGCTTAGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.258

100

0.868
  pilR Pseudomonas aeruginosa PAK

51.316

97.021

0.498

Multiple sequence alignment