Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACEN3H_RS17210 Genome accession   NZ_CP168231
Coordinates   3684788..3686356 (+) Length   522 a.a.
NCBI ID   WP_373358163.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679788..3691356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS17190 (ACEN3H_17190) - 3680277..3681578 (+) 1302 WP_373358162.1 homoserine dehydrogenase -
  ACEN3H_RS17195 (ACEN3H_17195) thrC 3681633..3682772 (+) 1140 WP_002048893.1 threonine synthase -
  ACEN3H_RS17200 (ACEN3H_17200) pbpG 3682883..3683929 (-) 1047 WP_155859233.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACEN3H_RS17205 (ACEN3H_17205) - 3684142..3684777 (+) 636 WP_002121174.1 response regulator -
  ACEN3H_RS17210 (ACEN3H_17210) pilS 3684788..3686356 (+) 1569 WP_373358163.1 PAS domain-containing sensor histidine kinase Regulator
  ACEN3H_RS17215 (ACEN3H_17215) pilR 3686381..3687793 (+) 1413 WP_373358164.1 sigma-54-dependent transcriptional regulator Regulator
  ACEN3H_RS17220 (ACEN3H_17220) - 3687797..3688981 (-) 1185 WP_151748533.1 S41 family peptidase -
  ACEN3H_RS17225 (ACEN3H_17225) gpmI 3688997..3690544 (-) 1548 WP_373358165.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59049.67 Da        Isoelectric Point: 6.5700

>NTDB_id=1043336 ACEN3H_RS17210 WP_373358163.1 3684788..3686356(+) (pilS) [Acinetobacter lactucae strain 2024CK-01095]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATKQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLRSSDLSLKILFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1043336 ACEN3H_RS17210 WP_373358163.1 3684788..3686356(+) (pilS) [Acinetobacter lactucae strain 2024CK-01095]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGTCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCACTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAAGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTACTATATGTTATTGCTATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAACAGCGCCTTA
TTGGCTTTCTTGTTTTTCGTGGTACACGGCATCGGACAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCACTGACTTT
CCACCAATCAATAGAACTCTATCAATTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTAGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACGCTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCCCATGAAATCCGCAATCCTCTTGCAGCAATTGTGCAAGCAAATGAACTACTTAAAGATAGTGATTTAGAACAACA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTTCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAGAAGCTCTGATTTATCTTTAAAGATATTATTTGATGAAAAGCAGCTCAGACAAGTGCTGATTAA
CCTAGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCCTATGTTCTGATCAATATTCATTCACAAACAAATAAAA
TCTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGACATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935

Multiple sequence alignment