Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACEN3H_RS15470 Genome accession   NZ_CP168231
Coordinates   3315772..3316176 (-) Length   134 a.a.
NCBI ID   WP_373358038.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3310772..3321176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS15440 (ACEN3H_15440) - 3310856..3311125 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACEN3H_RS15445 (ACEN3H_15445) rapZ 3311122..3311973 (-) 852 WP_373358037.1 RNase adapter RapZ -
  ACEN3H_RS15450 (ACEN3H_15450) panC 3311997..3312845 (-) 849 WP_239957102.1 pantoate--beta-alanine ligase -
  ACEN3H_RS15455 (ACEN3H_15455) panB 3312849..3313658 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACEN3H_RS15460 (ACEN3H_15460) folK 3313704..3314186 (-) 483 WP_016144358.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACEN3H_RS15465 (ACEN3H_15465) pcnB 3314183..3315646 (-) 1464 WP_016144357.1 polynucleotide adenylyltransferase PcnB -
  ACEN3H_RS15470 (ACEN3H_15470) comEA 3315772..3316176 (-) 405 WP_373358038.1 ComEA family DNA-binding protein Machinery gene
  ACEN3H_RS15475 (ACEN3H_15475) mazG 3316145..3316951 (-) 807 WP_216967311.1 nucleoside triphosphate pyrophosphohydrolase -
  ACEN3H_RS15480 (ACEN3H_15480) - 3317064..3317837 (+) 774 WP_061874683.1 SDR family oxidoreductase -
  ACEN3H_RS15485 (ACEN3H_15485) - 3317885..3320191 (-) 2307 WP_081175243.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15458.70 Da        Isoelectric Point: 10.4153

>NTDB_id=1043325 ACEN3H_RS15470 WP_373358038.1 3315772..3316176(-) (comEA) [Acinetobacter lactucae strain 2024CK-01095]
MQLSMNLWKNKHYIFITLFWSLISSTFVQGQSFDQNFKEWKAKQQMYDQKLSMQHSSHSNVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKVRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1043325 ACEN3H_RS15470 WP_373358038.1 3315772..3316176(-) (comEA) [Acinetobacter lactucae strain 2024CK-01095]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTACTCTATTTTGGAGCCTGATTTCATCAACCTT
TGTTCAGGGTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAGCAACAGATGTATGATCAGAAGTTGAGTATGC
AGCATTCCTCTCATTCTAATGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGTTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAAAATAAAGTGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388

Multiple sequence alignment