Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACEN3N_RS08970 Genome accession   NZ_CP168228
Coordinates   1912387..1913097 (-) Length   236 a.a.
NCBI ID   WP_004831157.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907387..1918097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS08950 (ACEN3N_08950) - 1908767..1909558 (+) 792 WP_100885013.1 M48 family metallopeptidase -
  ACEN3N_RS08955 (ACEN3N_08955) - 1909700..1910005 (+) 306 WP_004831161.1 phosphoethanolamine transferase domain-containing protein -
  ACEN3N_RS08960 (ACEN3N_08960) - 1910118..1910903 (+) 786 WP_004831159.1 M48 family metallopeptidase -
  ACEN3N_RS08965 (ACEN3N_08965) - 1911016..1912065 (-) 1050 WP_373351048.1 NADP(H)-dependent aldo-keto reductase -
  ACEN3N_RS08970 (ACEN3N_08970) crp 1912387..1913097 (-) 711 WP_004831157.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACEN3N_RS08975 (ACEN3N_08975) - 1913249..1913671 (+) 423 WP_004831156.1 OsmC family protein -
  ACEN3N_RS08980 (ACEN3N_08980) - 1913851..1914615 (-) 765 WP_151797240.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACEN3N_RS08985 (ACEN3N_08985) - 1914926..1916875 (-) 1950 WP_151961806.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  ACEN3N_RS08990 (ACEN3N_08990) - 1916850..1917782 (-) 933 WP_046760268.1 family 2A encapsulin nanocompartment shell protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26639.24 Da        Isoelectric Point: 4.7528

>NTDB_id=1043272 ACEN3N_RS08970 WP_004831157.1 1912387..1913097(-) (crp) [Acinetobacter bereziniae strain 2024CK-01176]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKFSEDEYNNDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1043272 ACEN3N_RS08970 WP_004831157.1 1912387..1913097(-) (crp) [Acinetobacter bereziniae strain 2024CK-01176]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCACCTGGTCAATTACCTGAGTCAGTCAAAGCTTTGCTCAA
GAGAGCCCACATCAATCGTTTTCCTAAACGCTCAACAATCATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGCGAAGATGATGAGCGTGAAATCGTTGTAGCCTATTTGAACCCTGGGGATTTT
TTCGGAGAAATGGGTTTATTTGAGCAAAACCCACAACGTACAGCCGAGGTCAGAACTCGTGACGTATGTGAAATCGCAGA
AATTTCATATGACAATTTCCACGAAATCAGTAAACAATACCCTGACTTAAGTTATGCAGTATTTGCACAACTTGTTCGTC
GCTTAAAGAATACAACACGTAAAGTGACTGACCTTGCATTTATTGATGTATCTGGACGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAACCTGAAGCGATGATTTTACCAAATGGTCGTCAGATTCGTATTACTCGTCAAGAAATTGGTCGCATCGT
AGGTTGCTCACGTGAAATGGTAGGGCGTGTATTAAAAACGCTTGAAGAGCAAGGTATGATCGAGACTGATGGTAAAGCAA
TTTTAATTTTTGATGCGTCTTTAGAAGAGTCTAAATTCTCTGAAGATGAATATAACAATGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

89.787

99.576

0.894
  crp Vibrio cholerae strain A1552

48.058

87.288

0.419
  crp Haemophilus influenzae Rd KW20

48.718

82.627

0.403

Multiple sequence alignment