Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACEN3N_RS01550 Genome accession   NZ_CP168228
Coordinates   335674..337242 (-) Length   522 a.a.
NCBI ID   WP_151713853.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 330674..342242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS01535 (ACEN3N_01535) gpmI 331395..332942 (+) 1548 WP_121774267.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACEN3N_RS01540 (ACEN3N_01540) - 332971..334143 (+) 1173 WP_309802485.1 S41 family peptidase -
  ACEN3N_RS01545 (ACEN3N_01545) pilR 334241..335656 (-) 1416 WP_100886096.1 sigma-54 dependent transcriptional regulator Regulator
  ACEN3N_RS01550 (ACEN3N_01550) pilS 335674..337242 (-) 1569 WP_151713853.1 PAS domain-containing sensor histidine kinase Regulator
  ACEN3N_RS01555 (ACEN3N_01555) - 337279..337914 (-) 636 WP_004718392.1 response regulator -
  ACEN3N_RS01560 (ACEN3N_01560) pbpG 338147..339199 (+) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACEN3N_RS01565 (ACEN3N_01565) thrC 339424..340563 (-) 1140 WP_373350674.1 threonine synthase -
  ACEN3N_RS01570 (ACEN3N_01570) - 340717..342021 (-) 1305 WP_005035343.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59377.04 Da        Isoelectric Point: 5.7777

>NTDB_id=1043260 ACEN3N_RS01550 WP_151713853.1 335674..337242(-) (pilS) [Acinetobacter bereziniae strain 2024CK-01176]
MSSTVSVPIYQTIYRLGTLYSGYRLIIAFCLIIIFLITLENQPVHYEYPSLYFYSIATFTIIAALQMMLLKFYPHGVAQQ
FIGFFIVDIPFLSILVFALNGPNLAISILFVIAVFTANFLLSKNKALFITLVSVIAIIYQQFLGSYFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACSLLGISPLYAHE
QYHLSNFQPDLYEILKDAMFRDGERFQFESQQSSFTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAITQANDLFLMSDEQQQALLHQMITKQTVRINSIIKDTLDMAKNKKTHASQIDLPLFLEDLLLHDLSDAQ
AKIQTEIEADLVIYFDDSQLRQVLVNLLRNALRHNDQNAEYVLVKAFKNDAHICIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPRMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1043260 ACEN3N_RS01550 WP_151713853.1 335674..337242(-) (pilS) [Acinetobacter bereziniae strain 2024CK-01176]
ATGTCGTCTACGGTATCTGTGCCTATTTATCAAACAATTTACCGTCTAGGCACACTTTACTCAGGTTATCGACTGATTAT
TGCCTTTTGTTTAATCATTATTTTTCTGATTACCTTAGAAAATCAGCCTGTTCACTACGAATACCCAAGTTTATATTTTT
ATTCGATCGCGACCTTTACCATCATTGCAGCATTGCAAATGATGCTGTTGAAATTTTACCCTCATGGCGTTGCACAGCAG
TTTATTGGCTTTTTTATTGTTGATATTCCATTCCTCAGTATCTTGGTATTTGCGCTGAATGGTCCAAATTTAGCCATCAG
TATTTTATTTGTGATTGCAGTCTTTACTGCAAATTTTTTACTGAGTAAAAACAAAGCATTATTTATTACCTTAGTGTCTG
TCATTGCCATTATCTATCAGCAATTTCTGGGCAGTTATTTTGATTTTTCTAATTTAAATAATATTAGTAATAGTGCCTTA
TTGGCTTTCTTGTTTTTTATGGTGTACGGAATCGGGCAAATTGCAATCAACCGTTTTCAGGTTCTTGAGTCCTTAAATAC
GTACCAATCTTTAGAGCTTTTTAAGCTACAAAACATCAACCGCTATATTTTAGAACAAATCGAAGTCGGTTATTTGGTAC
TCGATGAAAAATGTAAAATTATTGTCAGTAATCCTGCCGCATGTTCACTATTAGGAATATCTCCCCTGTATGCACATGAA
CAATATCACTTATCCAATTTCCAGCCTGATCTCTATGAAATTTTAAAAGATGCCATGTTTCGAGATGGTGAGCGTTTTCA
ATTTGAATCACAGCAATCTTCATTTACCGTTGATATTCGGGTACAAAAACTGATTGTTCCACATCAGGCGCTCACACTTC
TTGTACTTGAAGATGCACAAAAAATAAATCAAAAGGTACAACAGCTTAAACTTGCAGCATTGGGACAATTATCAGCAAGT
ATTGCTCATGAGATACGTAATCCACTCGCTGCCATTACGCAGGCAAATGATCTTTTTCTGATGAGTGATGAACAGCAGCA
AGCCTTACTCCATCAAATGATTACCAAGCAGACTGTCCGTATTAACAGTATTATCAAAGATACTTTAGATATGGCAAAAA
ACAAAAAAACCCATGCCAGTCAAATCGACTTACCACTATTTTTAGAAGATTTATTGTTACACGATTTAAGTGATGCTCAA
GCTAAAATCCAAACTGAAATTGAAGCAGATCTTGTGATTTATTTTGATGATTCTCAATTAAGGCAAGTACTTGTCAATCT
ATTGCGTAATGCATTACGCCATAATGATCAAAATGCGGAATACGTTTTGGTCAAGGCGTTTAAAAATGACGCACATATTT
GTATAGATGTGATTGATTATGGGAAAGGGGTCACAAAACAAGATCTTTCACAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAAACTATATGCGAAGCAAATCAAGCGAAATTAATTTACGTTGAGCA
AAAACAACAAGGGGCATGCTTTCGTATCGAATGCCCACGCATGGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-519)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.431

97.701

0.571

Multiple sequence alignment