Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACEN3N_RS01545 Genome accession   NZ_CP168228
Coordinates   334241..335656 (-) Length   471 a.a.
NCBI ID   WP_100886096.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 329241..340656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS01530 (ACEN3N_01530) lptG 330158..331228 (+) 1071 WP_004826310.1 LPS export ABC transporter permease LptG -
  ACEN3N_RS01535 (ACEN3N_01535) gpmI 331395..332942 (+) 1548 WP_121774267.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACEN3N_RS01540 (ACEN3N_01540) - 332971..334143 (+) 1173 WP_309802485.1 S41 family peptidase -
  ACEN3N_RS01545 (ACEN3N_01545) pilR 334241..335656 (-) 1416 WP_100886096.1 sigma-54 dependent transcriptional regulator Regulator
  ACEN3N_RS01550 (ACEN3N_01550) pilS 335674..337242 (-) 1569 WP_151713853.1 PAS domain-containing sensor histidine kinase Regulator
  ACEN3N_RS01555 (ACEN3N_01555) - 337279..337914 (-) 636 WP_004718392.1 response regulator -
  ACEN3N_RS01560 (ACEN3N_01560) pbpG 338147..339199 (+) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACEN3N_RS01565 (ACEN3N_01565) thrC 339424..340563 (-) 1140 WP_373350674.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53093.11 Da        Isoelectric Point: 6.7083

>NTDB_id=1043259 ACEN3N_RS01545 WP_100886096.1 334241..335656(-) (pilR) [Acinetobacter bereziniae strain 2024CK-01176]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLSETVTKAPLEESMLIGDSQIIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFIAINCGAISEELMESELFGHKKGCFSGATQDKQGLVQAANGGTLFLDE
VAELSLAMQAKLLRAVQEKKIRPLGSDTEIEVDFRIISATHQNIEALVEQGKFRHDLFFRIHVMDITLPPLRDRERDILI
LANHFIQQICTEWRIPSKSFTDAAKTFLLQQHYSGNVRELRNIIEKAITMCDEDSIDIQQLQPAPQRSSINKIESFESVP
TNHTAIELPNKAPNIPKEGLEQYLENVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=1043259 ACEN3N_RS01545 WP_100886096.1 334241..335656(-) (pilR) [Acinetobacter bereziniae strain 2024CK-01176]
ATGACTACACGACAACCATTGGTGTTACTTGTAGATGATGAACAAGATTTATGTATGTTGATGCAAATGAGCCTATCGCG
AATGGGCATCAAAACACATATGGCACATCATTTACAGCAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACAGATTTAAACTTGCCTGATGGGAGTGGTTTAGATTTAGTCAAACATGTATCGCAACATTATCCAAAAACGCCTATC
GCTGTACTCACAGCATATGGCAATATGGAAATCGCAATTGCATCACTTAAAGCAGGGGCTTTTGATTTCGTTAGCAAACC
AATCAATCAACTACATTTACAGCAACTTTTACAAAAAGCTTTACATGTTCCTCAGTTGAGTGAAACTGTAACTAAAGCCC
CACTTGAAGAGTCCATGCTCATTGGCGACTCGCAAATCATTCGTAAATTAAGAGAATCGATTAAAAAAATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGGGAGTCTGGTACAGGGAAAGAAGTGGTTGCGAATCTTATTCATTTACTCAGTAACCG
CAGTGATAGTCCATTTATTGCAATCAACTGCGGGGCTATCTCTGAAGAACTGATGGAAAGTGAGCTTTTCGGACATAAGA
AAGGCTGTTTCTCTGGCGCAACGCAAGATAAACAAGGCTTGGTTCAGGCTGCCAATGGTGGCACATTATTCTTGGATGAA
GTCGCAGAACTGTCTTTAGCCATGCAGGCTAAACTTTTACGTGCTGTTCAGGAAAAGAAAATCCGTCCTTTGGGTAGCGA
TACTGAAATAGAAGTTGATTTTCGAATCATCAGTGCAACGCATCAAAATATCGAAGCTCTGGTTGAACAAGGGAAGTTCC
GCCATGACTTGTTTTTTAGAATTCATGTCATGGATATTACACTCCCGCCATTACGTGATCGCGAACGTGACATCTTGATT
TTAGCCAATCATTTTATTCAACAAATTTGTACTGAATGGCGAATTCCGAGCAAATCATTCACAGATGCAGCTAAAACATT
TCTTTTACAGCAACATTATTCCGGTAATGTTCGTGAACTGCGCAATATTATTGAAAAAGCCATCACGATGTGTGATGAGG
ATTCTATCGATATTCAACAACTCCAACCTGCGCCACAACGGAGCAGTATTAACAAAATTGAATCCTTTGAGTCTGTCCCG
ACCAATCATACGGCGATTGAACTTCCAAACAAAGCACCGAATATTCCGAAAGAAGGCTTGGAACAATATTTGGAAAATGT
TGAAAAGGAAGTCTTGTTATCTGCGTTAAATCAAACGCATTGGAATCGGACCTTAGCTGCGAAAAAACTCGGCATGACCT
TTCGATCTTTACGTTATCGTTTGAAAAAGTTTGGTCTAGATACTGATGATGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

70.127

100

0.703
  pilR Pseudomonas aeruginosa PAK

47.186

98.089

0.463

Multiple sequence alignment