Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQW55_RS05630 Genome accession   NZ_CP168195
Coordinates   1338488..1339942 (-) Length   484 a.a.
NCBI ID   WP_033836745.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain WHRI 10262     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333488..1344942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQW55_RS05605 (ABQW55_005605) pilC 1333536..1334795 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ABQW55_RS05610 (ABQW55_005610) - 1335140..1335568 (+) 429 Protein_1104 pilin -
  ABQW55_RS05615 (ABQW55_005615) pilA2 1335665..1336078 (+) 414 WP_005921365.1 pilin Machinery gene
  ABQW55_RS05620 (ABQW55_005620) pilB 1336120..1337856 (+) 1737 WP_033836748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQW55_RS05625 (ABQW55_005625) - 1338119..1338301 (+) 183 Protein_1107 hypothetical protein -
  ABQW55_RS05630 (ABQW55_005630) pilR 1338488..1339942 (-) 1455 WP_033836745.1 sigma-54 dependent transcriptional regulator Regulator
  ABQW55_RS05635 (ABQW55_005635) - 1340209..1341822 (-) 1614 WP_005921369.1 PAS domain-containing sensor histidine kinase -
  ABQW55_RS05640 (ABQW55_005640) sucC 1342054..1343223 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQW55_RS05645 (ABQW55_005645) sucD 1343248..1344123 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ABQW55_RS05650 (ABQW55_005650) - 1344267..1344506 (+) 240 WP_269356857.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52518.37 Da        Isoelectric Point: 6.8289

>NTDB_id=1043008 ABQW55_RS05630 WP_033836745.1 1338488..1339942(-) (pilR) [Xanthomonas citri pv. malvacearum strain WHRI 10262]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1043008 ABQW55_RS05630 WP_033836745.1 1338488..1339942(-) (pilR) [Xanthomonas citri pv. malvacearum strain WHRI 10262]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment