Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QOR56_RS09900 Genome accession   NZ_OX460906
Coordinates   1989445..1990035 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984445..1995035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS09865 - 1984466..1984783 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  QOR56_RS09870 ruvX 1984809..1985228 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  QOR56_RS09875 - 1985228..1985494 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  QOR56_RS09880 spx 1985696..1986094 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  QOR56_RS09885 recA 1986310..1987449 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  QOR56_RS09890 cinA 1987523..1988782 (-) 1260 WP_001200981.1 competence/damage-inducible protein A Machinery gene
  QOR56_RS09895 - 1988871..1989422 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  QOR56_RS09900 ruvA 1989445..1990035 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  QOR56_RS09905 - 1990037..1991269 (-) 1233 WP_283572282.1 MFS transporter -
  QOR56_RS09910 hexB 1991301..1993274 (-) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  QOR56_RS09915 - 1993500..1993703 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=1042969 QOR56_RS09900 WP_000272490.1 1989445..1990035(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-265]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1042969 QOR56_RS09900 WP_000272490.1 1989445..1990035(-) (ruvA) [Streptococcus agalactiae isolate MRI Z2-265]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAACAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408

Multiple sequence alignment