Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   Q433_RS00330 Genome accession   NZ_CP007409
Coordinates   60024..60254 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55024..65254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS00295 (Q433_00310) ridA 55188..55565 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  Q433_RS00300 (Q433_00315) spoVG 55760..56053 (+) 294 WP_003218346.1 septation regulator SpoVG -
  Q433_RS00310 (Q433_00325) glmU 56246..57616 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  Q433_RS00315 (Q433_00330) prsS 57639..58592 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  Q433_RS00320 (Q433_00335) rplYB 58677..59291 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  Q433_RS00325 (Q433_00340) pth 59398..59964 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  Q433_RS00330 (Q433_00345) subA/fin 60024..60254 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  Q433_RS00335 (Q433_00350) mfd 60324..63857 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  Q433_RS00340 (Q433_00355) spoVT 63993..64529 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=104290 Q433_RS00330 WP_003243417.1 60024..60254(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=104290 Q433_RS00330 WP_003243417.1 60024..60254(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment