Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8565_RS07215 Genome accession   NZ_AP028330
Coordinates   1403440..1404621 (-) Length   393 a.a.
NCBI ID   WP_052801473.1    Uniprot ID   A0AAX1Z491
Organism   Campylobacter jejuni strain BCH-10089     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398440..1409621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS07185 (B10089_14160) - 1398984..1399325 (+) 342 WP_209392711.1 rod-binding protein -
  R8565_RS07190 (B10089_14170) flgM 1399388..1399585 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8565_RS07195 (B10089_14180) - 1399628..1400062 (+) 435 WP_002826016.1 flagellar protein FlgN -
  R8565_RS07200 (B10089_14190) flgK 1400072..1401898 (+) 1827 WP_052801475.1 flagellar hook-associated protein FlgK -
  R8565_RS07205 (B10089_14200) - 1401915..1402679 (+) 765 WP_052801474.1 TIGR02757 family protein -
  R8565_RS07210 (B10089_14210) - 1402683..1403447 (+) 765 WP_002855821.1 TSUP family transporter -
  R8565_RS07215 (B10089_14220) ctsF 1403440..1404621 (-) 1182 WP_052801473.1 type II secretion system F family protein Machinery gene
  R8565_RS07220 (B10089_14230) ctsE 1404618..1406177 (-) 1560 WP_052801472.1 GspE/PulE family protein Machinery gene
  R8565_RS07225 (B10089_14240) ctsX 1406167..1406754 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8565_RS07230 (B10089_14250) ctsP 1406758..1407366 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8565_RS07235 (B10089_14260) ctsD 1407359..1408771 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8565_RS07240 (B10089_14270) ctsR 1408749..1409060 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45774.39 Da        Isoelectric Point: 9.0938

>NTDB_id=104288 R8565_RS07215 WP_052801473.1 1403440..1404621(-) (ctsF) [Campylobacter jejuni strain BCH-10089]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=104288 R8565_RS07215 WP_052801473.1 1403440..1404621(-) (ctsF) [Campylobacter jejuni strain BCH-10089]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment