Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8565_RS07240 Genome accession   NZ_AP028330
Coordinates   1408749..1409060 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10089     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403749..1414060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS07220 (B10089_14230) ctsE 1404618..1406177 (-) 1560 WP_052801472.1 GspE/PulE family protein Machinery gene
  R8565_RS07225 (B10089_14240) ctsX 1406167..1406754 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8565_RS07230 (B10089_14250) ctsP 1406758..1407366 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8565_RS07235 (B10089_14260) ctsD 1407359..1408771 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8565_RS07240 (B10089_14270) ctsR 1408749..1409060 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  R8565_RS07245 (B10089_14280) nifJ 1409084..1412644 (-) 3561 WP_209392712.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8565_RS07250 (B10089_14290) - 1412737..1413378 (-) 642 WP_209392713.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=104293 R8565_RS07240 WP_002880445.1 1408749..1409060(-) (ctsR) [Campylobacter jejuni strain BCH-10089]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104293 R8565_RS07240 WP_002880445.1 1408749..1409060(-) (ctsR) [Campylobacter jejuni strain BCH-10089]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment