Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACBZ92_RS26845 Genome accession   NZ_CP168146
Coordinates   4988821..4989183 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia aryabhattai strain JSH01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4983821..4994183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ92_RS26835 (ACBZ92_26835) - 4984363..4986993 (+) 2631 WP_071269944.1 DEAD/DEAH box helicase -
  ACBZ92_RS26840 (ACBZ92_26840) - 4987290..4988336 (+) 1047 WP_071269946.1 LysM peptidoglycan-binding domain-containing protein -
  ACBZ92_RS26845 (ACBZ92_26845) ssbB 4988821..4989183 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  ACBZ92_RS26850 (ACBZ92_26850) - 4989280..4989717 (+) 438 WP_045293775.1 YwpF-like family protein -
  ACBZ92_RS26855 (ACBZ92_26855) - 4990241..4990663 (+) 423 WP_071269948.1 helix-turn-helix domain-containing protein -
  ACBZ92_RS26860 (ACBZ92_26860) fabZ 4990692..4991126 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACBZ92_RS26865 (ACBZ92_26865) - 4991210..4992031 (-) 822 WP_071269950.1 flagellar hook-basal body protein -
  ACBZ92_RS26870 (ACBZ92_26870) - 4992055..4992879 (-) 825 WP_071269952.1 flagellar hook-basal body protein -
  ACBZ92_RS26875 (ACBZ92_26875) - 4992994..4993995 (-) 1002 WP_071269954.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=1042571 ACBZ92_RS26845 WP_028411997.1 4988821..4989183(-) (ssbB) [Priestia aryabhattai strain JSH01]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1042571 ACBZ92_RS26845 WP_028411997.1 4988821..4989183(-) (ssbB) [Priestia aryabhattai strain JSH01]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCGGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACTGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAACC
ATCCGATTCGTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508

Multiple sequence alignment